Glyma01g12940 - SoyBase

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Report for Sequence Feature Glyma01g12940

Feature Type:	gene_model
Chromosome:	Gm01
Start:	16087454
stop:	16089518
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g12940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35230	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr2:14842871-14844079 FORWARD LENGTH=402	SoyBase	E_val: 5.00E-31	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0051645	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi localization	SoyBase	N/A	ISS
GO:0051646	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion localization	SoyBase	N/A	ISS
GO:0060151	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome localization	SoyBase	N/A	ISS
GO:0080113	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043078	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: polar nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_B9RN55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LRX2, putative n=1 Tax=Ricinus communis RepID=B9RN55_RICCO	SoyBase	E_val: 3.00E-69	ISS
UniRef100_UPI000233771C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233771C related cluster n=1 Tax=unknown RepID=UPI000233771C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g12940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g12940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g096800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g12940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g12940

Limit To All Plant Sequences

>Glyma01g12940.2   sequence type=CDS   gene model=Glyma01g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACTCAAAAAACAGGCATAATGACAATTTGGGTGTGAACAAAATGGGAAAAAACATTAGGAAGAGCCCATTACACCAGCCCAATTATGGCAACAACAACAACATTAATGTGGGTAGACAGCAACAACAGCCTCAGCCTCAGGTTTACAACATAAGCAAGAATGAGTTCAGGGATATTGTTCAGAAGCTTACAGGGTCACCCTCTCAGGACCCTCAATCCAAACCTCCTCAGAACAACAATTCCCCAAAACCTCAAAGCATGAGGTTGCAGAAAATTAGGCCTCCTCCTTTGCCACATGTGAGGCCTCCATTGCCTGTTCCTTACAATAACACCACCTTGCCAGCAGCTAGACCTGCTCAGTTTAGACAACAACCATCACCAAACCCTTTGCCACAAGTTAATAGTATAGCTGAGTCACCAATCTCTGCCTACATGAGATACCTTGAACATTCCATTACAGATCCAGCTTCAAGGGGTGCCCAATTTCAACACCATCCGGCTTCTTCTGCTTTGCTTCCTAACCCTCCTATGTTGCCTTTGAATGGCACAAGTCCTCCTCCTCCTGTGCCTGATGTTCCTTCCCCACAACCAAATGGACCTCCTATTTTTCCTTTACCTTCTCCAATCTCTCAGTTTCTCTTGCCTTCACCAAATGGCTACATGAATTTCCTCTCCCCTCAGCCTGGTTATCCACCTCTATTGTCCCCTGGCATTCAGTTTCCATATCCTCTTACTCCCAATTTCCCTTTCTCACCCTTGGCACAGTCAGGGATTTTAGGCCCCGGGCCACAGCCTCCACTTTCTCCAGGGCTGTTTCCTTTGTCTCCTTCAGGCTTTTTCCCCATCACAAGTCCTAGGTGGTGA

Predicted protein sequences of Glyma01g12940

Limit To All Plant Sequences

>Glyma01g12940.2   sequence type=predicted peptide   gene model=Glyma01g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSKNRHNDNLGVNKMGKNIRKSPLHQPNYGNNNNINVGRQQQQPQPQVYNISKNEFRDIVQKLTGSPSQDPQSKPPQNNNSPKPQSMRLQKIRPPPLPHVRPPLPVPYNNTTLPAARPAQFRQQPSPNPLPQVNSIAESPISAYMRYLEHSITDPASRGAQFQHHPASSALLPNPPMLPLNGTSPPPPVPDVPSPQPNGPPIFPLPSPISQFLLPSPNGYMNFLSPQPGYPPLLSPGIQFPYPLTPNFPFSPLAQSGILGPGPQPPLSPGLFPLSPSGFFPITSPRW*

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