SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g12740

Feature Type:gene_model
Chromosome:Gm01
Start:15937029
stop:15939729
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g12740
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G32640AT Annotation by Michelle Graham. TAIR10: Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11799042-11800913 REVERSE LENGTH=623 SoyBaseE_val: 0ISS
GO:0006568GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan metabolic process SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009269GO-bp Annotation by Michelle Graham. GO Biological Process: response to desiccation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009759GO-bp Annotation by Michelle Graham. GO Biological Process: indole glucosinolate biosynthetic process SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043619GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter in response to oxidative stress SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0051090GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:2000068GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response to insect SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11514Panther MYC JGI ISS
PTHR11514:SF7Panther B-MYC PROTO-ONCOGENE JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_I1J6C6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6C6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q41101UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phaseolin G-box binding protein PG1 n=1 Tax=Phaseolus vulgaris RepID=Q41101_PHAVU SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g12740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g12740 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g096600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g12740
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g12740
>Glyma01g12740.1   sequence type=CDS   gene model=Glyma01g12740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGAGTACCGGATGAACCTGTGGACCGACGACAACTCCTCCGTCATGGAGGCCTTCATGAGCTCCTCCGACCTCTCCTCCCTCTGGCTCCCCACGCCGCAATCCGCCGCCTCTACTACCACTCCTGGACTGGAAACCACCCGAGCACCGCCGCCTCAGTCCCACTCCCTCCTCAACCAGGAGACCCTCCAGCAGCGCCTCCAGACACTTATCGAAGGCGCCCGAGAGAGCTGGACCTACGCAATCTTCTGGCAGTCTTCCTACGACTATTCCTCCGGCACCTCCCTTCTCGGCTGGGGAGACGGTTATTACAAGGGTGAGGAGGACAAAGTCAAAGCCAAAGGCAAAACCCCCAAAACGACGTCGTCCGCGGAGCAGGACCACCGCAAAAAAGTCCTCCGCGAACTCAATTCCTTAATCTCTGGCCCCTCCGCTTCCGTTGACGACGTCGACGAAGAAGTCACCGACACCGAGTGGTTCTTCCTCGTGTCGATGACTCAGTCCTTCGTCAACGGAAGCGGCCTCCCGGGTCAGGCTTTTTTTAACTCGAGCCCGGTCTGGGTTGCCGGGCCGGACCGGCTGTCCGAGTCGGTCTGCGAACGGGCCCACCAGGGGCAGATGTTCGGGCTCCAGACTCTGGTCTGCATACCGTCCGCAAATGGCGTCGTTGAGCTCGCCTCCACGGAGGTGATTTTCCAGAACCCTGATCTGATGAACAAGGTGCGCGATTTGTTCAACTTCAACAACAACCCTGAAACTGGTTCCTGGGCGTTGAATTGCGTTGCCACCACCGATCAGGGGGAGAACGACCCTTCCTCACTCTGGCTCAACCCTGAAATCAGAGACTCCTCTACCGTTGCGCCGCCGAATTCAACGGTTAACAAGACTCTGCAGTTCGAAACCCCTGGTTCCAGTACCTTAACCGATACCCCTAGTGCTGCTGCTGTTCATGTACCTAAATCTAATGGCCAGGGTTTCTTCTCGAGGGAATTGAACTTTTCGAATTCATTGAAGCCTGAATCTGGTGAAATTCTGAGCTTTGGAGAGAGCAAGAAGAGCTCTTACAACGGGAGTTTCTTTCCCGGTGTTGTTGCAATTGAGGAGAACAACAAGAAGAGGTCTCCCGTTTCTCGGAGCAGCATTGACGATGGGATGCTGTCCTTCACATCCCTGCCGGCTGCAAATATAAAATCTGGTAGTGGTGGTGCCGGTGCCGGTGGTGGTGATTCGGATCACTCGGATCTGGAAGCTTCCATGGTGAAACAGGCAGACAGCAGAGTGATGGAGCCGGAGAAACGGCCTCGGAAGAGGGGGCGAAAGCCGGCCAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCCGAGAGACAAAGGAGAGAAAAGCTGAATCAAAGATTCTATGCTCTACGAGCTGTAGTTCCAAATGTATCCAAGATGGACAAGGCATCGTTGTTAGGTGACGCCATATCGTACATAAATGAGCTGAAATTGAAGCTCAACGGGCTGGATTCAGAGAAAGGGGAATTGGAGAAGCAATTGGATTCAGCCAAGAAGGAACTTGAGCTCGCGACCAAAAACCCTCCTCCTCCTCCACCACCACCACCTGGACTACCTCCATCTAATAACGAAGAAGCAAAGAAGACAACGACCAAGCTCGCTGATTTGGAGATAGAGGTGAAGATAATTGGTTGGGATGCGATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCAGCAAGGTTGATGGCAGCATTGAAGGACCTGGACTTGGAAGTGCATCACGCAAGCGTGTCCGTGGTGAATGATTTAATGATCCAACAAGCCACGGTGAACATGGGAAACAAGTTTTACACGCAGGAGCAGCTTCTGTCGGCACTCTCGTCCAAAGTTGGCGATGAACAACGATAG
Predicted protein sequences of Glyma01g12740
>Glyma01g12740.1   sequence type=predicted peptide   gene model=Glyma01g12740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEYRMNLWTDDNSSVMEAFMSSSDLSSLWLPTPQSAASTTTPGLETTRAPPPQSHSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGTSLLGWGDGYYKGEEDKVKAKGKTPKTTSSAEQDHRKKVLRELNSLISGPSASVDDVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGPDRLSESVCERAHQGQMFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFNNNPETGSWALNCVATTDQGENDPSSLWLNPEIRDSSTVAPPNSTVNKTLQFETPGSSTLTDTPSAAAVHVPKSNGQGFFSRELNFSNSLKPESGEILSFGESKKSSYNGSFFPGVVAIEENNKKRSPVSRSSIDDGMLSFTSLPAANIKSGSGGAGAGGGDSDHSDLEASMVKQADSRVMEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKLKLNGLDSEKGELEKQLDSAKKELELATKNPPPPPPPPPGLPPSNNEEAKKTTTKLADLEIEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGNKFYTQEQLLSALSSKVGDEQR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo