Glyma01g12340 - SoyBase

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Report for Sequence Feature Glyma01g12340

Feature Type:	gene_model
Chromosome:	Gm01
Start:	15542211
stop:	15548262
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g12340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17890	AT	Annotation by Michelle Graham. TAIR10: ARF-GAP domain 8 \| chr4:9937121-9939146 FORWARD LENGTH=413	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0706	KOG	Predicted GTPase-activating protein	JGI		ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF66	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01412	PFAM	Putative GTPase activating protein for Arf	JGI		ISS
UniRef100_B9SNV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SNV8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1J6C3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6C3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g12340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g12340 not represented in the dataset	Glyma01g12340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g12340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g096300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g12340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g12340

Limit To All Plant Sequences

>Glyma01g12340.4   sequence type=transcript   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGGCGGGAGACGATGACGTTTAGGTCAATTCAGAACAGAACGTTTATTTGTAACTCTTTTGGTTAGGGACAGCAACCATTCACCGACTCCGGAAAACCCAGGGGCCAACAACACCTCCCTCATTTATCTGGGGGGCAATCCCGTCATTTCAAATTCGGTTCCTTCCGCTAGTAAGAGCTCCTTTTTAAGACGACGAAAACAAATAAATATAATATATACGCAAACGCTCGAAACAACAACATTTGCGGTTCTGCCTGCAAATTTTCTTCCCCTCAATCTATATTACTCAGGTGGTGTTCCTGTTCCCCTCAAGCACCCCTGAGATTCATTCCCAAAAAGCTTAAAAAATTCTATTCAATTCAAATTCTAAATTTAATTTCCATTTCGTTTTCGTTTTCTGTTTTGATTTGATCTTCCAATGGCGTCCGATGGCTTCACCGACAAGAACACCGTGTTCAGAAAGCTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACATGGTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATACACATCTAGAGCTGCAGATTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCAGAAGTCAAGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGTTTGAATATGTAGAAAATGTCCAATCATCTGACTTGAACACTGGAGGTTCTCATGTTCTTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAAAATGTGTATGCTCTGTATTTAAGAGAATCTTTGGAGTTTGTTACATATGCCAGCCAATTATGTTTCAAATGTAATAGAAGAGTTCAATATACAATTCTTTTAGAAAATAAGATGCTATATTTTCAGGCTTGTCATATAGGCGGGTGTTTCTATTTTGTATAACAGGTACAATTAGATGTTGCTAATGTTTTAGATTTCTTTCTTTTTTTGGGTTAGACGACACCAGATTGTGGGTGAACTCGTGAACTCGAGTACGTTTGGATAGAGAATTTTAAGTGAGGAAAGTAATTTATAAGAAAATTTAAATTTTAGTAATCTAAAATTCATTGTTTGGATA

>Glyma01g12340.5   sequence type=transcript   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGGCGGGAGACGATGACGTTTAGGTCAATTCAGAACAGAACGTTTATTTGTAACTCTTTTGGTTAGGGACAGCAACCATTCACCGACTCCGGAAAACCCAGGGGCCAACAACACCTCCCTCATTTATCTGGGGGGCAATCCCGTCATTTCAAATTCGGTTCCTTCCGCTAGTAAGAGCTCCTTTTTAAGACGACGAAAACAAATAAATATAATATATACGCAAACGCTCGAAACAACAACATTTGCGGTTCTGCCTGCAAATTTTCTTCCCCTCAATCTATATTACTCAGGTGGTGTTCCTGTTCCCCTCAAGCACCCCTGAGATTCATTCCCAAAAAGCTTAAAAAATTCTATTCAATTCAAATTCTAAATTTAATTTCCATTTCGTTTTCGTTTTCTGTTTTGATTTGATCTTCCAATGGCGTCCGATGGCTTCACCGACAAGAACACCGTGTTCAGAAAGCTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACATGGTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATACACATCTAGAGCTGCAGATTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCAGAAGTCAAGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGTTTGAATATGTAGAAAATGTCCAATCATCTGACTTGAACACTGGAGGTTCTCATGTTCTTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAAAATGTGTATGCTCTGTATTTAAGAGAATCTTTGGAGTTTGTTACATATGCCAGCCAATTATGTTTCAAATGTAATAGAAGAGTTCAATATACAATTCTTTTAGAAAATAAGATGCTATATTTTCAGGCTTGTCATATAGGCGGGTGTTTCTATTTTGTATAACAGGTACAATTAGATGTTGCTAATGTTTTAGATTTCTTTCTTTTTTTGGGTTAGACGACACCAGATTGTGGGTGAACTCGTGAACTCGAGTACGTTTGGATAGAGAATTTTAAGTGAGGAAAGTAATTTATAAGAAAATTTAAATTTTAGTAATCTAAAATTCATTGTTTGGATA

Coding sequences of Glyma01g12340

Limit To All Plant Sequences

>Glyma01g12340.3   sequence type=CDS   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCGATGGCTTCACCGACAAGAACACCGTGTTCAGAAAGCTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACATGGTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATACACATCTAGAGCTGCAGATTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCAGAAGTCAAGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGTTTGAATATGTAGAAAATGTCCAATCATCTGACTTGAACACTGGAGGTTCTCATGTTCTTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAA

>Glyma01g12340.4   sequence type=CDS   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCGATGGCTTCACCGACAAGAACACCGTGTTCAGAAAGCTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACATGGTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATACACATCTAGAGCTGCAGATTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCAGAAGTCAAGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGTTTGAATATGTAGAAAATGTCCAATCATCTGACTTGAACACTGGAGGTTCTCATGTTCTTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAA

>Glyma01g12340.5   sequence type=CDS   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCGATGGCTTCACCGACAAGAACACCGTGTTCAGAAAGCTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACATGGTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATACACATCTAGAGCTGCAGATTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCAGAAGTCAAGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAGTAATTTCAGGTACTGTTAAGAAACCTATCGGTGCTAAAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGTTTGAATATGTAGAAAATGTCCAATCATCTGACTTGAACACTGGAGGTTCTCATGTTCTTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCAAGTGCCATCTCCAGCGCTGATCTTTTTGGTGACTCAAGAGACAACAACATCGATCTTACTGCTGGTGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCACTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAA

Predicted protein sequences of Glyma01g12340

Limit To All Plant Sequences

>Glyma01g12340.3   sequence type=predicted peptide   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDGFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAHGFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSAQGVNGLPEVKTNEVPKENTLEKPEKPESTSSPRASHSVISGTVKKPIGAKKAVKSGGLGARKLTKKPSESLYEQKPEEPPAPVPSSTNSMPAGPSPTSRFEYVENVQSSDLNTGGSHVLSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQETDEARRKFSNAKSISSSQFFGDQNKAADVDSQATLSKFSGSSAISSADLFGDSRDNNIDLTAGDLINRLSFQAQQDLSSLKNIAGETGKKLSSLASTLMTDLQDRIL*

>Glyma01g12340.4   sequence type=predicted peptide   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDGFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAHGFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSAQGVNGLPEVKTNEVPKENTLEKPEKPESTSSPRASHSVISGTVKKPIGAKKAVKSGGLGARKLTKKPSESLYEQKPEEPPAPVPSSTNSMPAGPSPTSRFEYVENVQSSDLNTGGSHVLSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQETDEARRKFSNAKSISSSQFFGDQNKAADVDSQATLSKFSGSSAISSADLFGDSRDNNIDLTAGDLINRLSFQAQQDLSSLKNIAGETGKKLSSLASTLMTDLQDRIL*

>Glyma01g12340.5   sequence type=predicted peptide   gene model=Glyma01g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDGFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAHGFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSAQGVNGLPEVKTNEVPKENTLEKPEKPESTSSPRASHSVISGTVKKPIGAKKAVKSGGLGARKLTKKPSESLYEQKPEEPPAPVPSSTNSMPAGPSPTSRFEYVENVQSSDLNTGGSHVLSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQETDEARRKFSNAKSISSSQFFGDQNKAADVDSQATLSKFSGSSAISSADLFGDSRDNNIDLTAGDLINRLSFQAQQDLSSLKNIAGETGKKLSSLASTLMTDLQDRIL*

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