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Report for Sequence Feature Glyma01g10278

Feature Type:gene_model
Chromosome:Gm01
Start:13324784
stop:13327645
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g10278
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45770AT Annotation by Michelle Graham. TAIR10: signal recognition particle receptor protein, chloroplast (FTSY) | chr2:18851248-18853402 FORWARD LENGTH=366 SoyBaseE_val: 7.00E-72ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006605GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting SoyBaseN/AISS
GO:0006614GO-bp Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane SoyBaseN/AISS
GO:0009772GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045038GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0005786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR11564Panther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS JGI ISS
PTHR11564:SF10Panther SUBFAMILY NOT NAMED JGI ISS
PF00448PFAM SRP54-type protein, GTPase domain JGI ISS
UniRef100_B9RDL9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cell division protein ftsy, putative n=1 Tax=Ricinus communis RepID=B9RDL9_RICCO SoyBaseE_val: 5.00E-73ISS
UniRef100_I1JKD2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKD2_SOYBN SoyBaseE_val: 3.00E-82ISS

Expression Patterns of Glyma01g10278
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g10278 not represented in the dataset
Glyma01g10278 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g10278 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma01g10278
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g10278
>Glyma01g10278.1   sequence type=CDS   gene model=Glyma01g10278   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGCACTGAAGAGGAATGTTTTGGAACTATTAACTTCCAAGGGGAGTAAAACTGAACTTCTACTTGGATATAGGAAGCCAGCTGTAATAATGATGGTTGGTGTTAATGGTGAAGGGAAGACTACATCTTTGGGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCTGGTGATACATTTAGAGCAGCTACTAGTGATCAGTTGGAAATATGGGGCGAAAGGACTGTGTGTGAGATTGTTGGAAAAGAGCTAGGTTTTGATATTGTATTATGTGATACATCTGTGCGTAAGCTAATGGAAGAGTTCATTTCCTGTAAAAGGCCTGTTGCTAAAGTCGTTCCTGGTGTACCTAATGAGATTCTACTGGTTCTGGATGGGACTACTGGTTTGAATATGTTGCCACAAGCGAGAGAATTCAATGATGTAAGTTCAATTTCTGCCTTTTAA
Predicted protein sequences of Glyma01g10278
>Glyma01g10278.1   sequence type=predicted peptide   gene model=Glyma01g10278   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EALKRNVLELLTSKGSKTELLLGYRKPAVIMMVGVNGEGKTTSLGKLAYRLKNEGAKILMAAGDTFRAATSDQLEIWGERTVCEIVGKELGFDIVLCDTSVRKLMEEFISCKRPVAKVVPGVPNEILLVLDGTTGLNMLPQAREFNDVSSISAF*






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