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Report for Sequence Feature Glyma01g10121

Feature Type:gene_model
Chromosome:Gm01
Start:13008741
stop:13009964
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g10121
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05580AT Annotation by Michelle Graham. TAIR10: fatty acid desaturase 8 | chr5:1664331-1666190 FORWARD LENGTH=382 SoyBaseE_val: 9.00E-22ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016717GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water SoyBaseN/AISS
GO:0042389GO-mf Annotation by Michelle Graham. GO Molecular Function: omega-3 fatty acid desaturase activity SoyBaseN/AISS
UniRef100_B5LSX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Microsomal omega-3 fatty acid desaturase n=1 Tax=Glycine max RepID=B5LSX5_SOYBN SoyBaseE_val: 1.00E-31ISS
UniRef100_B5LSX5UniRef Annotation by Michelle Graham. Best UniRef hit: Microsomal omega-3 fatty acid desaturase n=1 Tax=Glycine max RepID=B5LSX5_SOYBN SoyBaseE_val: 1.00E-31ISS

Expression Patterns of Glyma01g10121
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g10121 not represented in the dataset
Glyma01g10121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g10121 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma01g10121
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g10121
>Glyma01g10121.1   sequence type=CDS   gene model=Glyma01g10121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTATGTCAGCTTACAGAGAAATTTTACAAGAATCTAGACAACATGACAAGAATGCTGAGATTCACTCTTCCTTTGCCCATCTTTGCATACCCCTTTTATTTGTGGAGTAGAAGTCCAGGAAAAGAAGGTTCTCATTTCAACCCTTACATCAAGTTGTTCTCCCCTGGTGAGAGAAGAGATGTGCTAACTTCAACTCTGTTGGGGCATCATGCTTTCTGTGGTTCTTTATCTTTACCTCACAATGGGTCCACTTTTTATGCTCAAGCTCTATGGGGTTCCCTATTTGGTAATCTCACTCCCACACTTTATTTATACATCACACACCAGTTTGGGTTATCTATAAGGCTCTGGAGTATGCATGGCTCCGGAGTATGCTATGGGAGGATTATTTTCTGTGAAATCTGA
Predicted protein sequences of Glyma01g10121
>Glyma01g10121.1   sequence type=predicted peptide   gene model=Glyma01g10121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLCQLTEKFYKNLDNMTRMLRFTLPLPIFAYPFYLWSRSPGKEGSHFNPYIKLFSPGERRDVLTSTLLGHHAFCGSLSLPHNGSTFYAQALWGSLFGNLTPTLYLYITHQFGLSIRLWSMHGSGVCYGRIIFCEI*






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