SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20830 | AT | Annotation by Michelle Graham. TAIR10: transferases;folic acid binding | chr2:8968370-8969798 REVERSE LENGTH=297 | SoyBase | E_val: 5.00E-94 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005542 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: folic acid binding | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| PTHR12234 | Panther | FORMIMINOTRANSFERASE-CYCLODEAMINASE | JGI | ISS | |
| PF07837 | PFAM | Formiminotransferase domain, N-terminal subdomain | JGI | ISS | |
| UniRef100_B9RW59 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Formiminotransferase-cyclodeaminase, putative n=1 Tax=Ricinus communis RepID=B9RW59_RICCO | SoyBase | E_val: 5.00E-164 | ISS |
| UniRef100_I1J694 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J694_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g09900 not represented in the dataset |
Glyma01g09900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g070400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g09900.2 sequence type=transcript gene model=Glyma01g09900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TACATAAACATTGTCTTTGTTTGTCTCCTTCAATATATATGATATAATAATGATAATGGTGGGAGATGGTATCACGTGTAAGCATTGGCAAGCTCGCATGCGTTGATATTATTATATATTTACCAATGAAAATGACGTGTGGTTCTTATATTTATTTCTCCTGCTGCGACGACTGGTACATGATCAGCAGTTCCCCCATTTTAAGTTAGATTATTATCACACCTCGTGAACACAGATTGCAGTTGGTGCGGAGGATCGATCTCGCCATGAATTTCAATTGCACTGCTAACAAGAAAACCGTAGACCAATCTATCTTATTGTGCTGCAAGTTCTTTGTCTCTGAATCACGCAACAATGCCACTCTCAATGCAATAGAACGAGCTGCAAGGTCAAACCCAGAAACTGTGATTGTGAACATGTTTCATGATCGAGCTTATAACAGGGCAAGGTACGACCTTGTGTCGTATGTTTTGCATGACTGCACAGGAAATCCCATATACAGCCCCTTGCATCAAACTGTCATAGCCATGGCTGAGGCTACATTCAATGCCGTCAACCTTGAATTCCATGAAGGTGCTCACCCTCGCTTGGGCGCAGTGGACGACATTGTTTTCCATCCACTTGGTCATGCGTCGCTCGACGAGGCAGCGTGGCTCGCCAAAGCAGTGGCAGCAGACATTGGCAACCGATTCAGTGTGCCAGTGTTTCTGTACGCTGCAGCCCACCCAACAGGGAAGGAACTTGACGCCATAAGGCGAGAGCTTGGATATTACAGGCCAAATTCTAGGGGCAGCCAATGGGCCGGGTGGGCAATGCCCGAAACGCTTCCTCTAAGCCCAGATGAAGGGCCTAACGTCGTTTCAAGAGCTAAAGGCATCACAATGATTGGTGCACGCCCTTGGGTCACACTCTACAACGTTCCAATTTTGTGCACTGATGTGTCAGTAGCAAGAAGGATTGCAAGGAAGGTGAGTGCTCGTGGCGGTGGCCTCCCCACTATGCAAACGATTGCGCTTGTCCATGAGGACTCAACTGAGATAGCCTGCATGCTTTTGGACTCCAAGCAGGTTGGAGCGGATAGGGTTCAAAATAGGGTTGAGATGCTGGCCGCACAAGAGGGACTGGACATAGAACAAGGTTATTTCACTGACATTTCTCCAGAAATGATCGTAGAGAAATACATGAAATTAATCAATAGTGCTAACAAATCGTGATCATGCATGTGTGTAACTCATTGAACTTGTTGATGAGTAATCATAAATGATCGAAGGCTGTAATTTTCAGTAAGTGTAAAACAAAGGTTATGAATTGTGATTCCAAAATGGTTGGCTGGGATAACAAACTAAGGGTAACAAATATATCTATATGTATTTATATATCAAAATAATAACCTTTCGCTCAAAATGTGCACTTTCAGTTGTTTTTCATCCTCTTATTTGTTTTATAGCATATTTTTGGATAAAATTCTAAGCTAGACGTGATGCAAGTTTGTGAAGTAGCTAGTATTAGCTTCTGCATCAAAAATGAGAATTGAATGTGGAAATCAAGGAATACATGCGTTGTGGCAAATAATGCATGACACAAACAGAGAAAATTAAGCAACTAATGTGTTTATGATCAATCTTTAATCTTGTTAGTATCCCTTGATTTATGC
>Glyma01g09900.1 sequence type=CDS gene model=Glyma01g09900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTCAATTGCACTGCTAACAAGGAGCAAAAGAAAACCGTAGACCAATCTATCTTATTGTGCTGCAAGTTCTTTGTCTCTGAATCACGCAACAATGCCACTCTCAATGCAATAGAACGAGCTGCAAGGTCAAACCCAGAAACTGTGATTGTGAACATGTTTCATGATCGAGCTTATAACAGGGCAAGGTACGACCTTGTGTCGTATGTTTTGCATGACTGCACAGGAAATCCCATATACAGCCCCTTGCATCAAACTGTCATAGCCATGGCTGAGGCTACATTCAATGCCGTCAACCTTGAATTCCATGAAGGTGCTCACCCTCGCTTGGGCGCAGTGGACGACATTGTTTTCCATCCACTTGGTCATGCGTCGCTCGACGAGGCAGCGTGGCTCGCCAAAGCAGTGGCAGCAGACATTGGCAACCGATTCAGTGTGCCAGTGTTTCTGTACGCTGCAGCCCACCCAACAGGGAAGGAACTTGACGCCATAAGGCGAGAGCTTGGATATTACAGGCCAAATTCTAGGGGCAGCCAATGGGCCGGGTGGGCAATGCCCGAAACGCTTCCTCTAAGCCCAGATGAAGGGCCTAACGTCGTTTCAAGAGCTAAAGGCATCACAATGATTGGTGCACGCCCTTGGGTCACACTCTACAACGTTCCAATTTTGTGCACTGATGTGTCAGTAGCAAGAAGGATTGCAAGGAAGGTGAGTGCTCGTGGCGGTGGCCTCCCCACTATGCAAACGATTGCGCTTGTCCATGAGGACTCAACTGAGATAGCCTGCATGCTTTTGGACTCCAAGCAGGTTGGAGCGGATAGGGTTCAAAATAGGGTTGAGATGCTGGCCGCACAAGAGGGACTGGACATAGAACAAGGTTATTTCACTGACATTTCTCCAGAAATGATCGTAGAGAAATACATGAAATTAATCAATAGTGCTAACAAATCGTGA >Glyma01g09900.2 sequence type=CDS gene model=Glyma01g09900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTTCAATTGCACTGCTAACAAGAAAACCGTAGACCAATCTATCTTATTGTGCTGCAAGTTCTTTGTCTCTGAATCACGCAACAATGCCACTCTCAATGCAATAGAACGAGCTGCAAGGTCAAACCCAGAAACTGTGATTGTGAACATGTTTCATGATCGAGCTTATAACAGGGCAAGGTACGACCTTGTGTCGTATGTTTTGCATGACTGCACAGGAAATCCCATATACAGCCCCTTGCATCAAACTGTCATAGCCATGGCTGAGGCTACATTCAATGCCGTCAACCTTGAATTCCATGAAGGTGCTCACCCTCGCTTGGGCGCAGTGGACGACATTGTTTTCCATCCACTTGGTCATGCGTCGCTCGACGAGGCAGCGTGGCTCGCCAAAGCAGTGGCAGCAGACATTGGCAACCGATTCAGTGTGCCAGTGTTTCTGTACGCTGCAGCCCACCCAACAGGGAAGGAACTTGACGCCATAAGGCGAGAGCTTGGATATTACAGGCCAAATTCTAGGGGCAGCCAATGGGCCGGGTGGGCAATGCCCGAAACGCTTCCTCTAAGCCCAGATGAAGGGCCTAACGTCGTTTCAAGAGCTAAAGGCATCACAATGATTGGTGCACGCCCTTGGGTCACACTCTACAACGTTCCAATTTTGTGCACTGATGTGTCAGTAGCAAGAAGGATTGCAAGGAAGGTGAGTGCTCGTGGCGGTGGCCTCCCCACTATGCAAACGATTGCGCTTGTCCATGAGGACTCAACTGAGATAGCCTGCATGCTTTTGGACTCCAAGCAGGTTGGAGCGGATAGGGTTCAAAATAGGGTTGAGATGCTGGCCGCACAAGAGGGACTGGACATAGAACAAGGTTATTTCACTGACATTTCTCCAGAAATGATCGTAGAGAAATACATGAAATTAATCAATAGTGCTAACAAATCGTGA
>Glyma01g09900.1 sequence type=predicted peptide gene model=Glyma01g09900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNFNCTANKEQKKTVDQSILLCCKFFVSESRNNATLNAIERAARSNPETVIVNMFHDRAYNRARYDLVSYVLHDCTGNPIYSPLHQTVIAMAEATFNAVNLEFHEGAHPRLGAVDDIVFHPLGHASLDEAAWLAKAVAADIGNRFSVPVFLYAAAHPTGKELDAIRRELGYYRPNSRGSQWAGWAMPETLPLSPDEGPNVVSRAKGITMIGARPWVTLYNVPILCTDVSVARRIARKVSARGGGLPTMQTIALVHEDSTEIACMLLDSKQVGADRVQNRVEMLAAQEGLDIEQGYFTDISPEMIVEKYMKLINSANKS* >Glyma01g09900.2 sequence type=predicted peptide gene model=Glyma01g09900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNFNCTANKKTVDQSILLCCKFFVSESRNNATLNAIERAARSNPETVIVNMFHDRAYNRARYDLVSYVLHDCTGNPIYSPLHQTVIAMAEATFNAVNLEFHEGAHPRLGAVDDIVFHPLGHASLDEAAWLAKAVAADIGNRFSVPVFLYAAAHPTGKELDAIRRELGYYRPNSRGSQWAGWAMPETLPLSPDEGPNVVSRAKGITMIGARPWVTLYNVPILCTDVSVARRIARKVSARGGGLPTMQTIALVHEDSTEIACMLLDSKQVGADRVQNRVEMLAAQEGLDIEQGYFTDISPEMIVEKYMKLINSANKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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