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Report for Sequence Feature Glyma01g09860

Feature Type:gene_model
Chromosome:Gm01
Start:12384415
stop:12385443
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g09860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60170AT Annotation by Michelle Graham. TAIR10: RNA binding (RRM/RBD/RNP motifs) family protein | chr5:24228178-24232394 FORWARD LENGTH=985 SoyBaseE_val: 3.00E-17ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
UniRef100_G7JRI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: CCR4-NOT transcription complex subunit n=1 Tax=Medicago truncatula RepID=G7JRI8_MEDTR SoyBaseE_val: 2.00E-16ISS
UniRef100_I1LR14UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LR14_SOYBN SoyBaseE_val: 7.00E-31ISS

Expression Patterns of Glyma01g09860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g09860 not represented in the dataset
Glyma01g09860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g09860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma01g09860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g09860
>Glyma01g09860.1   sequence type=CDS   gene model=Glyma01g09860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGATGAAGGAGAAAGAAATTTTCTTCTTTGTGCTGAAGAGATGGATTTGATAGATCAGCAGTTGAAGCCTTGCAAATGCGGTTATGAGCCCGTAAATCTACCAAATAGCATTTCGAAGAGAGTATTTTGCTCAGAGCGTGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACAACAGCTTGTGTCATTCAACAGTTTCCAAATGATACTTGTAGTGTAATGGGTGAAGAGGAAGTGGTTTGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTATACCTTTAAGGTACAAATTTTTATTGAAACTTGTCATACATGGGATATTTAGCATTGACTTTAGCATTAGGTGTAATCATTCTTGTTGGACCTTTTGCTTCCATTTAGCGTATGCATGA
Predicted protein sequences of Glyma01g09860
>Glyma01g09860.1   sequence type=predicted peptide   gene model=Glyma01g09860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDEGERNFLLCAEEMDLIDQQLKPCKCGYEPVNLPNSISKRVFCSERGKVLKVSMSRTTACVIQQFPNDTCSVMGEEEVVCCIQNVHGFVLEGIPLRYKFLLKLVIHGIFSIDFSIRCNHSCWTFCFHLAYA*






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