Glyma01g09660 - SoyBase

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Report for Sequence Feature Glyma01g09660

Feature Type:	gene_model
Chromosome:	Gm01
Start:	11996467
stop:	12008222
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g09660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26190	AT	Annotation by Michelle Graham. TAIR10: Phosphoribulokinase / Uridine kinase family \| chr1:9057285-9060433 REVERSE LENGTH=674	SoyBase	E_val: 0	ISS
GO:0006796	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate-containing compound metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG4203	KOG	Armadillo/beta-Catenin/plakoglobin	JGI		ISS
PTHR10285	Panther	URIDINE KINASE RELATED	JGI		ISS
PF00485	PFAM	Phosphoribulokinase / Uridine kinase family	JGI		ISS
PF01928	PFAM	CYTH domain	JGI		ISS
UniRef100_B9RLC2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uridine cytidine kinase I, putative n=1 Tax=Ricinus communis RepID=B9RLC2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1J693	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J693_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g09660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g09660 not represented in the dataset	Glyma01g09660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g09660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g070300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g09660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g09660

Limit To All Plant Sequences

>Glyma01g09660.2   sequence type=transcript   gene model=Glyma01g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGCGTTCCCTGGCGTGCCTTGGTGACCGTTTGGTCACGGGTTCAAATTCGGAAACAACTTCTTTGCATATTCAAGGAAATCAGGAGTTGTTCAATGGCAAAAGATTCTGCCGATGCTGATTCCCATCACAGGCGTCTTGGTCTTTTGAAAGATCAAGTTCACTTGGTTAAAAGGAAAGGCTCTGATCGCTATGAGATTGCTCCAATCCAAGACCAACTATCATTTGAGAAGGGGTTTTTCATAGTGATCCGTGCATGCCAATTGTTATCCCAAAAGAATGATGGAATAATATTGGTAGGGGTGGCAGGTCCTTCAGGGGCTGGGAAGACTATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACAATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGGACAGTCGAAGCCCCGAGTTCTCGAATTGTGATTATAGAGGGCATCTATGCCTTGAGTGAGAAGTTGCGACCCCTGATGGACCTTCGAGTCTCTGTTACAGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCAGAGACGGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTACTTATATATTAAAGTCAGGAAGGAATGTAGAAGTTGATAAAATTAAAGCTGTTCTCGCTGAGGATTTTAAGGAAACAACAGAACAAACTTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGTGGACTAATGGCTTTGGGATACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTAAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGGTACAAGGCAGAGATCGTTTAGTTCTAAAATACATAGGAGAACAGCTGGGTATAGAAGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGAATGAGGTTATGGCTCTACCAGATGATTTGAAGACAAGGCTCAGCCTAGATGAGGATTTGGTGTCAAGCCCGAAAGAAGCACTATCTAGAGCTTCTGCCGGCAGAGTTGCCATGAGGAATAAACATCTGAGGAGTGGAATATCACAGTCGTATACCAATCAGAGGGACAAAAATCTAGCTAAGGTTACTGGATATGGTGCCAACAATAGAAGGTTTGGTGAAAGCAATTCAGATTCCACCGCAATGCCAGTAAATCAGGGAACCATCAATCAGCTTTCAGACCAAATTTCTGCCCTCAATGATAGAATGGACGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAGTTAACCATCAAGAAAAATTCTCCAAGCCAACAAAACATGTCACTTCAAGCTGAGACATGCAATGGTTCTGCTCCCACCTCTTACTTCATCACTAGTTTGGGCAGTGGTTCCCTTACTGGATCTAAAATGACAAATTCCTCTTCGTCCTCGCAGTTAGCTAAAGATTCTCCTTTGATGGATGAGATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGGAGCTTGGGGGAGAAGTCTCGCCCAACAAGAACCAACAGCGGGAAAAGCATCACCATGTCATCGGATTCCATGGGAGCTTGTGTTATGGCGGTGGTCACAGTTGGTTGTTTGGGGATCTTCTTGATGAAGGGTTTTTTGAACAAAAAGTGATTCATTCCTCTAGGTATAGTCAGCTTTTTAGGTTCAAAAATATTTTTCTTCACTGTGACAACCCTTCTGTTAAGAAAGGTGTTGAGACATTGCCAGTTGAAGATAGATTCAGGAGACAGTCATTTTAGGATCATTTGAGGGTCAGTGAGAGGATGGTGCTCACTTGAAATTTTGTCACTTCGCGGACTTATTACTTTGTTATCACAATTTTATGCCATTTTCAACACAACAAAACAACAGAAGTAGAGTCTTTGGTTTAGAATCTTGATCAGGTGGTATACCATATACCTTTCTTTCAACTTTTTTAATCTTTAAATAAGTTGGTAATGGTGAGGAGGTCAATTCAGCAACATCTATGACATAATTGAGGTAGAAAATGCGGCAAATACAAGACGATGTACCGAGGTGTTACATGCAAATTGTTACAAATGAAACAAATCATGCTGTTACCAAGTGATGGTGCCTGTTACTCTGTTACTTTCCTGAATTCCTTCATTTTCTCGTGCAAATGCCTCTTCGCTAGCGTTATGTTATCATGTTCGTTCCTTTACTCTTAGTTGCGTATAATACATTTGGAGTAATTTTACTGTATGCTCTATTCACGCAAATTTTTCATAGTGAAAACAGAATGGC

Coding sequences of Glyma01g09660

Limit To All Plant Sequences

>Glyma01g09660.1   sequence type=CDS   gene model=Glyma01g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGATTCTGCCGATGCTGATTCCCATCACAGGCGTCTTGGTCTTTTGAAAGATCAAGTTCACTTGGTTAAAAGGAAAGGCTCTGATCGCTATGAGATTGCTCCAATCCAAGACCAACTATCATTTGAGAAGGGGTTTTTCATAGTGATCCGTGCATGCCAATTGTTATCCCAAAAGAATGATGGAATAATATTGGTAGGGGTGGCAGGTCCTTCAGGGGCTGGGAAGACTATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACAATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGGACAGTCGAAGCCCCGAGTTCTCGAATTGTGATTATAGAGGGCATCTATGCCTTGAGTGAGAAGTTGCGACCCCTGATGGACCTTCGAGTCTCTGTTACAGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCAGAGACGGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTACTTATATATTAAAGTCAGGAAGGAATGTAGAAGTTGATAAAATTAAAGCTGTTCTCGCTGAGGATTTTAAGGAAACAACAGAACAAACTTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGTGGACTAATGGCTTTGGGATACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTAAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGGTACAAGGCAGAGATCGTTTAGTTCTAAAATACATAGGAGAACAGCTGGGTATAGAAGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGAATGAGGTTATGGCTCTACCAGATGATTTGAAGACAAGGCTCAGCCTAGATGAGGATTTGGTGTCAAGCCCGAAAGAAGCACTATCTAGAGCTTCTGCCGGCAGAGTTGCCATGAGGAATAAACATCTGAGGAGTGGAATATCACAGTCGTATACCAATCAGAGGGACAAAAATCTAGCTAAGGTTACTGGATATGGTGCCAACAATAGAAGGTTTGGTGAAAGCAATTCAGATTCCACCGCAATGCCAGTAAATCAGGGAACCATCAATCAGCTTTCAGACCAAATTTCTGCCCTCAATGATAGAATGGACGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAGTTAACCATCAAGAAAAATTCTCCAAGCCAACAAAACATGTCACTTCAAGCTGAGACATGCAATGGTTCTGCTCCCACCTCTTACTTCATCACTAGTTTGGGCAGTGGTTCCCTTACTGGATCTAAAATGACAAATTCCTCTTCGTCCTCGCAGTTAGCTAAAGATTCTCCTTTGATGGATGAGATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGGAGCTTGGGGGAGAAGTCTCGCCCAACAAGAACCAACAGCGGGAAAAGCATCACCATGTCATCGGATTCCATGGGAGCTTGTGTTATGGCGGTGGTCACAGTTGGTTGTTTGGGGATCTTCTTGATGAAGGGTTTTTTGAACAAAAAGTGA

>Glyma01g09660.2   sequence type=CDS   gene model=Glyma01g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGATTCTGCCGATGCTGATTCCCATCACAGGCGTCTTGGTCTTTTGAAAGATCAAGTTCACTTGGTTAAAAGGAAAGGCTCTGATCGCTATGAGATTGCTCCAATCCAAGACCAACTATCATTTGAGAAGGGGTTTTTCATAGTGATCCGTGCATGCCAATTGTTATCCCAAAAGAATGATGGAATAATATTGGTAGGGGTGGCAGGTCCTTCAGGGGCTGGGAAGACTATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACAATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGGACAGTCGAAGCCCCGAGTTCTCGAATTGTGATTATAGAGGGCATCTATGCCTTGAGTGAGAAGTTGCGACCCCTGATGGACCTTCGAGTCTCTGTTACAGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCAGAGACGGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTACTTATATATTAAAGTCAGGAAGGAATGTAGAAGTTGATAAAATTAAAGCTGTTCTCGCTGAGGATTTTAAGGAAACAACAGAACAAACTTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGTGGACTAATGGCTTTGGGATACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTAAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGGTACAAGGCAGAGATCGTTTAGTTCTAAAATACATAGGAGAACAGCTGGGTATAGAAGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGAATGAGGTTATGGCTCTACCAGATGATTTGAAGACAAGGCTCAGCCTAGATGAGGATTTGGTGTCAAGCCCGAAAGAAGCACTATCTAGAGCTTCTGCCGGCAGAGTTGCCATGAGGAATAAACATCTGAGGAGTGGAATATCACAGTCGTATACCAATCAGAGGGACAAAAATCTAGCTAAGGTTACTGGATATGGTGCCAACAATAGAAGGTTTGGTGAAAGCAATTCAGATTCCACCGCAATGCCAGTAAATCAGGGAACCATCAATCAGCTTTCAGACCAAATTTCTGCCCTCAATGATAGAATGGACGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAGTTAACCATCAAGAAAAATTCTCCAAGCCAACAAAACATGTCACTTCAAGCTGAGACATGCAATGGTTCTGCTCCCACCTCTTACTTCATCACTAGTTTGGGCAGTGGTTCCCTTACTGGATCTAAAATGACAAATTCCTCTTCGTCCTCGCAGTTAGCTAAAGATTCTCCTTTGATGGATGAGATATCAAGCATCGCACGCAGTCAGCGTCAGGTCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGGAGCTTGGGGGAGAAGTCTCGCCCAACAAGAACCAACAGCGGGAAAAGCATCACCATGTCATCGGATTCCATGGGAGCTTGTGTTATGGCGGTGGTCACAGTTGGTTGTTTGGGGATCTTCTTGATGAAGGGTTTTTTGAACAAAAAGTGA

Predicted protein sequences of Glyma01g09660

Limit To All Plant Sequences

>Glyma01g09660.1   sequence type=predicted peptide   gene model=Glyma01g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDSADADSHHRRLGLLKDQVHLVKRKGSDRYEIAPIQDQLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTIFTEKILNFMPSIAIISMDNYNDASRIVDGNFDDPRLTDYDTLLQNLHNLKEGKPVQVPIYDFKSSSRTGYRTVEAPSSRIVIIEGIYALSEKLRPLMDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSGRNVEVDKIKAVLAEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVLKYIGEQLGIEGSYIPRTYIEQIQIEKLVNEVMALPDDLKTRLSLDEDLVSSPKEALSRASAGRVAMRNKHLRSGISQSYTNQRDKNLAKVTGYGANNRRFGESNSDSTAMPVNQGTINQLSDQISALNDRMDEFTNRIEELNSKLTIKKNSPSQQNMSLQAETCNGSAPTSYFITSLGSGSLTGSKMTNSSSSSQLAKDSPLMDEISSIARSQRQVMHQLDNLNNLLRGSLGEKSRPTRTNSGKSITMSSDSMGACVMAVVTVGCLGIFLMKGFLNKK*

>Glyma01g09660.2   sequence type=predicted peptide   gene model=Glyma01g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDSADADSHHRRLGLLKDQVHLVKRKGSDRYEIAPIQDQLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTIFTEKILNFMPSIAIISMDNYNDASRIVDGNFDDPRLTDYDTLLQNLHNLKEGKPVQVPIYDFKSSSRTGYRTVEAPSSRIVIIEGIYALSEKLRPLMDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSGRNVEVDKIKAVLAEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVLKYIGEQLGIEGSYIPRTYIEQIQIEKLVNEVMALPDDLKTRLSLDEDLVSSPKEALSRASAGRVAMRNKHLRSGISQSYTNQRDKNLAKVTGYGANNRRFGESNSDSTAMPVNQGTINQLSDQISALNDRMDEFTNRIEELNSKLTIKKNSPSQQNMSLQAETCNGSAPTSYFITSLGSGSLTGSKMTNSSSSSQLAKDSPLMDEISSIARSQRQVMHQLDNLNNLLRGSLGEKSRPTRTNSGKSITMSSDSMGACVMAVVTVGCLGIFLMKGFLNKK*

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