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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma01g09500

Feature Type:gene_model
Chromosome:Gm01
Start:11608788
stop:11608970
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52650AT Annotation by Michelle Graham. TAIR10: RNA binding Plectin/S10 domain-containing protein | chr5:21355781-21357003 REVERSE LENGTH=179 SoyBaseE_val: 4.00E-16ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR12146Panther 40S RIBOSOMAL PROTEIN S10 JGI ISS
PF03501PFAM Plectin/S10 domain JGI ISS
UniRef100_C6T1S1UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T1S1_SOYBN SoyBaseE_val: 2.00E-15ISS
UniRef100_F4YFA1UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein s10 n=1 Tax=Camellia sinensis RepID=F4YFA1_CAMSI SoyBaseE_val: 1.00E-14ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g09500 not represented in the dataset

Glyma01g09500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g069200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g09500.1   sequence type=CDS   gene model=Glyma01g09500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCATTCTCGAGAAGAACCGTAAAGAGATCTGCAAATACATCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATGTGGCAAAGCACCCAGAGATTGAT

>Glyma01g09500.1   sequence type=predicted peptide   gene model=Glyma01g09500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IILEKNRKEICKYIFQEGVCFAKKDFNVAKHPEID







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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