Glyma01g09350 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g09350

Feature Type:	gene_model
Chromosome:	Gm01
Start:	11294640
stop:	11296592
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g09350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69940	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr1:26343549-26344971 REVERSE LENGTH=361	SoyBase	E_val: 6.00E-151	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
UniRef100_B9I449	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Populus trichocarpa RepID=B9I449_POPTR	SoyBase	E_val: 2.00E-160	ISS
UniRef100_I1J676	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J676_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g09350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g09350

Paralog	Evidence	Comments
Glyma02g13820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g09350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g068100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g09350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g09350

Limit To All Plant Sequences

>Glyma01g09350.1   sequence type=CDS   gene model=Glyma01g09350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCAAAACTATATGCACTACCATTCAGGTGACTCTCATAGTCGCTTTTCTAACAACCCAGGTTGTTTTCTCTGATGACAATGTGCCAATTCCTGCTAACAAGGAACAATTGGGCACATGGTTTAGTACTAATGTAGGACCTTTAGATCAAAGAAAAAGCACTATAGACCCCGCATTGGTGGCTGCTGAAGAAGGTGCTAAGGTTGTGAAGGTAATGCAAGATGGAAGTGGGGAATTCAAGACCATCACTGATGCCATTAACAGTGTACCTAATGGGAACACCAAGCGTGTAATTGTGTTTATTGGAGCTGGAAATTATAATGAGAAAATCAAAATTGAGAGGACAAAGCCTTTCGTCACATTGTATGGGGTACCAGAGAAAATGCCAAACTTGACATTTGGGGGAACCGCACAACAATATGGCACTGTTGATAGTGCTACATTGATTGTTGAATCAGATTATTTTGTGGCAGCTAACATCATGATCTCGAACACTGCACCGAGACCTGATCCAAAAACGCCAGGAGGTCAAGCAGTGGCATTGCGAATTTCAGGTGACAAAGCAGCATTTTACAATTGCAAGATGTTTGGATTCCAGGACACAATTTGTGATGATAGGAATAAACATTTTTTCAAAGACTGCTTAATTCAAGGCACCATGGATTATATTTTTGGAAGTGGGAAGTCACTATATATGAGTACCGAACTAAGAACGCTTGGCGACAATGGGATTACTGTTATAGTGGCACAAGCAAGAAAAAGTGAGACAGAGGACAATGCCTACTCATTTGTACATTGTGATGTTACTGGAACTGGTACTGGGACTTTCTTGGGCAGAGCATGGATGTCTCATCCTAGAGTGGTCTTTGCATACAGCACCATGAGTGGTATTGTGAATAAATTAGGGTGGAGTAACAACAATCACCCCGAACATGACAAAACTGTTCGTTTTGGAGAGTACCAGAACACGGGACCTGGTGCAGACCCCAAAGGGCGTGCTCCTATAACTAAGCAACTAAGTGAAACGGAGGTCAAACCTTACATAACACTTGCGATGATTGAAGGCTCCAAATGGCTACTTCCTCCTCCAACTCCCAAAGTCTAA

Predicted protein sequences of Glyma01g09350

Limit To All Plant Sequences

>Glyma01g09350.1   sequence type=predicted peptide   gene model=Glyma01g09350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKTICTTIQVTLIVAFLTTQVVFSDDNVPIPANKEQLGTWFSTNVGPLDQRKSTIDPALVAAEEGAKVVKVMQDGSGEFKTITDAINSVPNGNTKRVIVFIGAGNYNEKIKIERTKPFVTLYGVPEKMPNLTFGGTAQQYGTVDSATLIVESDYFVAANIMISNTAPRPDPKTPGGQAVALRISGDKAAFYNCKMFGFQDTICDDRNKHFFKDCLIQGTMDYIFGSGKSLYMSTELRTLGDNGITVIVAQARKSETEDNAYSFVHCDVTGTGTGTFLGRAWMSHPRVVFAYSTMSGIVNKLGWSNNNHPEHDKTVRFGEYQNTGPGADPKGRAPITKQLSETEVKPYITLAMIEGSKWLLPPPTPKV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain