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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma01g09040

Feature Type:gene_model
Chromosome:Gm01
Start:10601639
stop:10602621
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80460AT Annotation by Michelle Graham. TAIR10: Actin-like ATPase superfamily protein | chr1:30246960-30249055 REVERSE LENGTH=522 SoyBaseE_val: 1.00E-82ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006072GO-bp Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0010188GO-bp Annotation by Michelle Graham. GO Biological Process: response to microbial phytotoxin SoyBaseN/AISS
GO:0019563GO-bp Annotation by Michelle Graham. GO Biological Process: glycerol catabolic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0004370GO-mf Annotation by Michelle Graham. GO Molecular Function: glycerol kinase activity SoyBaseN/AISS
GO:0016773GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor SoyBaseN/AISS
GO:0019200GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate kinase activity SoyBaseN/AISS
PTHR10196Panther XYLULOSE KINASE JGI ISS
PTHR10196:SF9Panther SUGAR KINASE-RELATED JGI ISS
PF02782PFAM FGGY family of carbohydrate kinases, C-terminal domain JGI ISS
UniRef100_Q6RUF8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycerol kinase n=1 Tax=Glycine max RepID=Q6RUF8_SOYBN SoyBaseE_val: 6.00E-95ISS
UniRef100_UPI0002337614UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337614 related cluster n=1 Tax=unknown RepID=UPI0002337614 SoyBaseE_val: 1.00E-129ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g09040 not represented in the dataset

Glyma01g09040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g066700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g09040.1   sequence type=CDS   gene model=Glyma01g09040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAACAAGGTCTAACTATCATGTGCCATCCTATAGACAATGCTACCAGTGTGGAATGGATGAACTCCAGTTTGCTATCACCGGAGATGCAGTGCAGTGGCTTAGAGACAGTCTTGGCATCATTTCTAGTGCTTCAAAGATAGAGGAGATGGCATTACAGGTTGAATCCACTGGTGGGGTTTACTTTGTTCCTGCTTTTAATGGATTGTTTGCTCCATGGTGGCGTGAGGATGCTCGTAGCGTTTGTATTGGAATAACAAGGTTTACAAGCAAAGCTCACATTGCTCGAGCTACGCTCGAGAGCATGTGTTTCCAAGTGAAAGATGTCTTGGATTCAATGCATAAAGATTCAGGAGAAAGTGAATCTCGAAAGAATTTTTTGCTTAGATGTTCATCATATTTGGTGGGATGTCCAGCAATTAGACCTACTGACATAGAGACAACAACACTTGGAGCAGCCTATACTGTAGGATTAGCTATTGGGATTTGGAAAGAAGATTATCTTTTCAATACTAAGGACAAGTTGAAGAATGCTAATGTTTTCCGCCCCTTAATGACTGAGGAATTAAGGAAAAAGAAAGTGGCCTCTTGGTGCAAAGCTGTTAGTAAAACTTTCGACTTAGCGGATCTTTTTCTTTGA

>Glyma01g09040.1   sequence type=predicted peptide   gene model=Glyma01g09040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTRSNYHVPSYRQCYQCGMDELQFAITGDAVQWLRDSLGIISSASKIEEMALQVESTGGVYFVPAFNGLFAPWWREDARSVCIGITRFTSKAHIARATLESMCFQVKDVLDSMHKDSGESESRKNFLLRCSSYLVGCPAIRPTDIETTTLGAAYTVGLAIGIWKEDYLFNTKDKLKNANVFRPLMTEELRKKKVASWCKAVSKTFDLADLFL*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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