SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22860 | AT | Annotation by Michelle Graham. TAIR10: Serine carboxypeptidase S28 family protein | chr5:7639511-7642945 REVERSE LENGTH=502 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| GO:0008236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity | SoyBase | N/A | ISS |
| KOG2183 | KOG | Prolylcarboxypeptidase (angiotensinase C) | JGI | ISS | |
| PTHR11010 | Panther | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED | JGI | ISS | |
| PTHR11010:SF13 | Panther | SERINE CARBOXYPEPTIDASE S28 FAMILY PROTEIN | JGI | ISS | |
| PF05577 | PFAM | Serine carboxypeptidase S28 | JGI | ISS | |
| UniRef100_B9SCN3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal Pro-X carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SCN3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J655 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J655_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g08600 not represented in the dataset |
Glyma01g08600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g13616 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g065400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g08600.2 sequence type=transcript gene model=Glyma01g08600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTTAATTTTGTTTAAGGCTTCCCACATGTGCGCAACTTATGATTGAAATTGGAAACTACATACATGCTTTGAGAGGATCACAATTTATAAAACCCAAAAGCATGCTTTGAGGATCACGCGCTAGATATAGATATATAAGAACGTTTTGATTTATATCTTCGAATGAAATAAACCAACATCAAACCAAGCCATTTTTTCTTCTCCCTTGTAGCAATGAAACACCACTCCTTGTCATTTAAATGGCTTCTTCTGATTTTCCTCACACACTCAACCCTTCTCACCGCAACACACTCGTTGACAATTCCAAGGATGAGTCCAATTCCTGAATGGGAAACAACACTACACAACCACCCTGCAATTAATACAGAGGAAGTGAAAACATTTTACTTCAAACAGGTTCTGGATCACTTCAACTACAGGCCAGAAAGCTACACAACGTTTCAACAAAGATATCTAATCAATTTCAAGTACTGGGGTGGTGCCAATTCTAGTGCTCCCATATTTGCATACTTTGGTGCTGAATCACCAATTGATAACTCCCCTAATGGCGTGGGATTTTTAACTGATAACGCTGCTTCCTTCAATGCCCTCTTGGTATACATAGAGTGCTTGCTTCATGGTTTAGGCTCAAATATCCCCACCTGGCGATTGGTGCCCTGGCCTCATCAGCTCCAATCCTATACTTTGATAAAATTACACCACAAAATGGTTACTACTCTACTGTCACAAGGGATTATCGATGGTTTGCAGGAAGCCAGTGAGACATGTTATGAAACTGTACTAAAGTCTTGGTCTGAAATCCGCAGAATAGCTTCTCAACCAAATGGTCTAGTCACTCTCAGCCAGAGATTCAACACTTGCCATACATTAAACCAATCTTATGAATTAATCGACTACCTAAGGTCGACGTATGTTTATGCGGCTCAATATAATCAACCACCAAGATACCCAGTTAGTATGATTTGTGGTGGCATTGATGGAGAATCTCTTGGAAGCGATATCCTAAGTAAGATATATGCAGGTATTGTGGCTCTTAGGGGAAACAGCACATGCAAAGTTAATGGCCCAACTAATGTATCTGAGACAACTGTGGGATGGAGATGGCAGACATGTAGTGAAATGGTAATACCCATCGGCATTGGAAATGATACAATGTTTGAGCCTATCCCTTTTAACCTAACGAGGTATGCCGAAGGGTGCAAGGAACAATATGGTGTCTCACCTCGCCCTCATTGGGTCACTACTTACTATGGAGGCCATAATATTAAATTGGTCCTTCGAAGATTGGGTAGCAACATTATTTTCTCCAATGGGCTAAGGGACCCATATAGTATTGGCGGGGTTCTGGATAACATATCAGACAGCATCGTTGCCGTTCATACAGTTAATGGTTCTCATTGCCTGGATCTTCTGCGGGCAAATCAAAGCGATCCAGGATGGTTGGTCGAACAACGAAAGAAAGAGGTCAAGATCATCAAAAGGTGGATCACACAGTACTATGCTGACCTTGATGCACTCAAAGACAAGCCAAAATTCCAGAGCAAATGATAGGGGAAAATTAAACAAGTTGACAAACATTGTATTACGAAGGCTGTGCTCTGAAACTTTGGTGCATCCACCATAATTTGCAACACTCCCAACCTTCATAATTTTATTTTTTTTATTGTTTAACGGTGTAAAGAATTTTTACACTCATTTAATAATCACAAACATATATGAATGATAAGTTTAACGTCTTTTACAACAATTATGTTATTAGAAGTCATATTTATCATATTTTTT
>Glyma01g08600.1 sequence type=CDS gene model=Glyma01g08600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACACCACTCCTTGTCATTTAAATGGCTTCTTCTGATTTTCCTCACACACTCAACCCTTCTCACCGCAACACACTCGTTGACAATTCCAAGGATGAGTCCAATTCCTGAATGGGAAACAACACTACACAACCACCCTGCAATTAATACAGAGGAAGTGAAAACATTTTACTTCAAACAGGTTCTGGATCACTTCAACTACAGGCCAGAAAGCTACACAACGTTTCAACAAAGATATCTAATCAATTTCAAGTACTGGGGTGGTGCCAATTCTAGTGCTCCCATATTTGCATACTTTGGTGCTGAATCACCAATTGATAACTCCCCTAATGGCGTGGGATTTTTAACTGATAACGCTGCTTCCTTCAATGCCCTCTTGGTATACATAGAGCACCGGTATTATGGGAAATCAGTGCAATTTGGATCCAGGGAAGAAGCATTGAAGAATGCAAGCACTATTGGGTATTTCAACTCAGCTCAAGCCTTGGCAGATTATGCATCAATACTCAAACATGTAAAGAAGACATTACACGCCAAAAATTCCCCAGTGATTGTAATTGGAGGATCATACGGTGGAATGCTTGCTTCATGGTTTAGGCTCAAATATCCCCACCTGGCGATTGGTGCCCTGGCCTCATCAGCTCCAATCCTATACTTTGATAAAATTACACCACAAAATGGTTACTACTCTACTGTCACAAGGGATTATCGAGAAGCCAGTGAGACATGTTATGAAACTGTACTAAAGTCTTGGTCTGAAATCCGCAGAATAGCTTCTCAACCAAATGGTCTAGTCACTCTCAGCCAGAGATTCAACACTTGCCATACATTAAACCAATCTTATGAATTAATCGACTACCTAAGGTCGACGTATGTTTATGCGGCTCAATATAATCAACCACCAAGATACCCAGTTAGTATGATTTGTGGTGGCATTGATGGAGAATCTCTTGGAAGCGATATCCTAAGTAAGATATATGCAGGTATTGTGGCTCTTAGGGGAAACAGCACATGCAAAGTTAATGGCCCAACTAATGTATCTGAGACAACTGTGGGATGGAGATGGCAGACATGTAGTGAAATGGTAATACCCATCGGCATTGGAAATGATACAATGTTTGAGCCTATCCCTTTTAACCTAACGAGGTATGCCGAAGGGTGCAAGGAACAATATGGTGTCTCACCTCGCCCTCATTGGGTCACTACTTACTATGGAGGCCATAATATTAAATTGGTCCTTCGAAGATTGGGTAGCAACATTATTTTCTCCAATGGGCTAAGGGACCCATATAGTATTGGCGGGGTTCTGGATAACATATCAGACAGCATCGTTGCCGTTCATACAGTTAATGGTTCTCATTGCCTGGATCTTCTGCGGGCAAATCAAAGCGATCCAGGATGGTTGGTCGAACAACGAAAGAAAGAGGTCAAGATCATCAAAAGGTGGATCACACAGTACTATGCTGACCTTGATGCACTCAAAGACAAGCCAAAATTCCAGAGCAAATGA >Glyma01g08600.2 sequence type=CDS gene model=Glyma01g08600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACACCACTCCTTGTCATTTAAATGGCTTCTTCTGATTTTCCTCACACACTCAACCCTTCTCACCGCAACACACTCGTTGACAATTCCAAGGATGAGTCCAATTCCTGAATGGGAAACAACACTACACAACCACCCTGCAATTAATACAGAGGAAGTGAAAACATTTTACTTCAAACAGGTTCTGGATCACTTCAACTACAGGCCAGAAAGCTACACAACGTTTCAACAAAGATATCTAATCAATTTCAAGTACTGGGGTGGTGCCAATTCTAGTGCTCCCATATTTGCATACTTTGGTGCTGAATCACCAATTGATAACTCCCCTAATGGCGTGGGATTTTTAACTGATAACGCTGCTTCCTTCAATGCCCTCTTGGTATACATAGAGTGCTTGCTTCATGGTTTAGGCTCAAATATCCCCACCTGGCGATTGGTGCCCTGGCCTCATCAGCTCCAATCCTATACTTTGATAAAATTACACCACAAAATGGTTACTACTCTACTGTCACAAGGGATTATCGATGGTTTGCAGGAAGCCAGTGAGACATGTTATGAAACTGTACTAAAGTCTTGGTCTGAAATCCGCAGAATAGCTTCTCAACCAAATGGTCTAGTCACTCTCAGCCAGAGATTCAACACTTGCCATACATTAAACCAATCTTATGAATTAATCGACTACCTAAGGTCGACGTATGTTTATGCGGCTCAATATAATCAACCACCAAGATACCCAGTTAGTATGATTTGTGGTGGCATTGATGGAGAATCTCTTGGAAGCGATATCCTAAGTAAGATATATGCAGGTATTGTGGCTCTTAGGGGAAACAGCACATGCAAAGTTAATGGCCCAACTAATGTATCTGAGACAACTGTGGGATGGAGATGGCAGACATGTAGTGAAATGGTAATACCCATCGGCATTGGAAATGATACAATGTTTGAGCCTATCCCTTTTAACCTAACGAGGTATGCCGAAGGGTGCAAGGAACAATATGGTGTCTCACCTCGCCCTCATTGGGTCACTACTTACTATGGAGGCCATAATATTAAATTGGTCCTTCGAAGATTGGGTAGCAACATTATTTTCTCCAATGGGCTAAGGGACCCATATAGTATTGGCGGGGTTCTGGATAACATATCAGACAGCATCGTTGCCGTTCATACAGTTAATGGTTCTCATTGCCTGGATCTTCTGCGGGCAAATCAAAGCGATCCAGGATGGTTGGTCGAACAACGAAAGAAAGAGGTCAAGATCATCAAAAGGTGGATCACACAGTACTATGCTGACCTTGATGCACTCAAAGACAAGCCAAAATTCCAGAGCAAATGA
>Glyma01g08600.1 sequence type=predicted peptide gene model=Glyma01g08600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHHSLSFKWLLLIFLTHSTLLTATHSLTIPRMSPIPEWETTLHNHPAINTEEVKTFYFKQVLDHFNYRPESYTTFQQRYLINFKYWGGANSSAPIFAYFGAESPIDNSPNGVGFLTDNAASFNALLVYIEHRYYGKSVQFGSREEALKNASTIGYFNSAQALADYASILKHVKKTLHAKNSPVIVIGGSYGGMLASWFRLKYPHLAIGALASSAPILYFDKITPQNGYYSTVTRDYREASETCYETVLKSWSEIRRIASQPNGLVTLSQRFNTCHTLNQSYELIDYLRSTYVYAAQYNQPPRYPVSMICGGIDGESLGSDILSKIYAGIVALRGNSTCKVNGPTNVSETTVGWRWQTCSEMVIPIGIGNDTMFEPIPFNLTRYAEGCKEQYGVSPRPHWVTTYYGGHNIKLVLRRLGSNIIFSNGLRDPYSIGGVLDNISDSIVAVHTVNGSHCLDLLRANQSDPGWLVEQRKKEVKIIKRWITQYYADLDALKDKPKFQSK* >Glyma01g08600.2 sequence type=predicted peptide gene model=Glyma01g08600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHHSLSFKWLLLIFLTHSTLLTATHSLTIPRMSPIPEWETTLHNHPAINTEEVKTFYFKQVLDHFNYRPESYTTFQQRYLINFKYWGGANSSAPIFAYFGAESPIDNSPNGVGFLTDNAASFNALLVYIECLLHGLGSNIPTWRLVPWPHQLQSYTLIKLHHKMVTTLLSQGIIDGLQEASETCYETVLKSWSEIRRIASQPNGLVTLSQRFNTCHTLNQSYELIDYLRSTYVYAAQYNQPPRYPVSMICGGIDGESLGSDILSKIYAGIVALRGNSTCKVNGPTNVSETTVGWRWQTCSEMVIPIGIGNDTMFEPIPFNLTRYAEGCKEQYGVSPRPHWVTTYYGGHNIKLVLRRLGSNIIFSNGLRDPYSIGGVLDNISDSIVAVHTVNGSHCLDLLRANQSDPGWLVEQRKKEVKIIKRWITQYYADLDALKDKPKFQSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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