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Report for Sequence Feature Glyma01g08580

Feature Type:gene_model
Chromosome:Gm01
Start:9980288
stop:9986041
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26300AT Annotation by Michelle Graham. TAIR10: BSD domain-containing protein | chr1:9096023-9099746 REVERSE LENGTH=316 SoyBaseE_val: 2.00E-110ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03909PFAM BSD domain JGI ISS
UniRef100_I1J654UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J654_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q67YP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: MRNA, complete cds, clone: RAFL24-17-M19 n=2 Tax=Arabidopsis thaliana RepID=Q67YP2_ARATH SoyBaseE_val: 2.00E-107ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g08580 not represented in the dataset

Glyma01g08580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g13590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g065100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g08580.1   sequence type=CDS   gene model=Glyma01g08580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACCTGTGGAAGCGCGCGAAGACCTTCGCCGAAGAGGCCGCGAAGAAATCCCAATCCCTGACCCCTTCCTCCTCCCGGATCGCCGATCTCGTCTCCGAAACCGCCAAGAAATCGAAGGAGCTCGCCGCCGAAGCCTCCAAGAAGGCCGACATCCTCAAATCCGCCGCGCTTCGCCAGGCAGACCAGATCAAGTCCTTCTCCGACACAATCGCAATTCCTCCCCAATTCGCCGCCATTGCCTCCGCCGCCACTTCCGCCGCCACCTCCCCGCCCTCCGCCACGCCGCAGGAGCTCGAGAAGTTCGGCGTCACTGATGACCTCCGATCCTTCGTCAAGGGCCTCACTTCCACCACCTTCCAGAACTTTCCTCTTAGTTCCGACGAATCGGAGGGCTCTGATGTGACTACTGTGGGATCCAATGTTCGGAAGGATCTCAATGAGTTTCAGGAGAAGCATGCCACTCTCGTTTTAACTACTGTCAAGGAAATTTCAAGATTGAGATATGAACTATGTCCACGTGCTATGAAAGAAAGACACTTTTGGAAGATATATTTCACACTTGTCAACACTCATGTGGCTCCGTATGAGAAGCAATATATGCAGGAGGTTCAGCTTAGAGCGGCAGCAGAGCAGAATGTAGATCCTAAGGAAGAGCAACCTGCTGTTACTGGAGGAACTGGAAAGGCAGAAGCAATTGGGGGCAATGTGAAGAGTAGGCCTTCTAATTCATCCTCTACTGAACAAGACTTAGATACATTTCTTCTTGGAGATCTTGAAGACAGTGATGAAGCTCCAGATGACGGTGAGGGCAGTTTTGATGATGATTTTGACAAGATTGGCAATTCAGATGTTGAAGATGAGAAGCATGTGAAGAAAACTGCTGCAACAGTTTAG

>Glyma01g08580.1   sequence type=predicted peptide   gene model=Glyma01g08580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDLWKRAKTFAEEAAKKSQSLTPSSSRIADLVSETAKKSKELAAEASKKADILKSAALRQADQIKSFSDTIAIPPQFAAIASAATSAATSPPSATPQELEKFGVTDDLRSFVKGLTSTTFQNFPLSSDESEGSDVTTVGSNVRKDLNEFQEKHATLVLTTVKEISRLRYELCPRAMKERHFWKIYFTLVNTHVAPYEKQYMQEVQLRAAAEQNVDPKEEQPAVTGGTGKAEAIGGNVKSRPSNSSSTEQDLDTFLLGDLEDSDEAPDDGEGSFDDDFDKIGNSDVEDEKHVKKTAATV*







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