Report for Sequence Feature Glyma01g08043
Feature Type: gene_model
Chromosome: Gm01
Start: 9021977
stop: 9042121
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g08043
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G38440 AT
Annotation by Michelle Graham. TAIR10: LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:17989115-17994549 FORWARD LENGTH=1465
SoyBase E_val: 0 ISS
GO:0030154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell differentiation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
KOG4732
KOG
Uncharacterized conserved protein
JGI ISS
PTHR21483 Panther
FAMILY NOT NAMED
JGI ISS
PTHR21483:SF11 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF08620 PFAM
RPAP1-like, C-terminal
JGI ISS
PF08621 PFAM
RPAP1-like, N-terminal
JGI ISS
UniRef100_G7JWY0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase II-associated protein n=1 Tax=Medicago truncatula RepID=G7JWY0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002337516 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337516 related cluster n=1 Tax=unknown RepID=UPI0002337516
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g08043
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g08043
Paralog Evidence Comments
Glyma02g13361 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g08043 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g063600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g08043
Coding sequences of Glyma01g08043
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g08043.1 sequence type=CDS gene model=Glyma01g08043 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAATCAAAAGGGCAAAGGAGGAGAGCAACCCAAGAAGAAGGTGGTGAACACGAGCTCCCTCCAAATAAACCAAAACGATTCCTTTCACTTGGTTGGTTCCATCGTGGAAAAGGGTATCTCTGATTCACACAACAACAACCCCACAACAACACCCTTCCATTTTTTCCCCAAGCCCACTGTTCTTCCTTTCCCCGTTGCGCGCCATCGTTCACATGGCCCTCATTGGCGTCCACTGAGCAGTAAAGGGAATGATGATGGTGAGGGTGATGATAATGTTGAGGATGAAGAAGATAAAAATTTCCAGGAGTTTGAAAAAGTTTCAGCCTTTGCCATGCCGGTACAAAGGAGGAGGAAAAAGGGTTTGGATTTTAGAAAATGGAAAGAGATCACTCGGGATGATAGTTCTTCCATGGGGAAGGAAACAGAGGAAGATGTGTCAAGCTTTAGCCAAACTACAGGGAAAAAGAACAAAAAGGGCAGTAAGAGTACATACAAGAAAACCTCATCTTCAGATGATAATGTCATTTCTCCGATGAAAGTGGATACTAAACCACTGTTAGATAACTCAGATGGTGGGTTTATCAATTCAACTACGACTATGGAAGTAGATACATCAAATAAGGTAAATCACCAGGCAAAAGTTAAATACACCAGAATTTTTGATGACAAGGGACAAAATGAATCTGTGCCTGGATTGGACCAAATTTCCTCTGATAGGATGGCTGATTACAATTTTGGATCCCTAGATTTGCAAAGGCCAGGGCAAACTGACTTGACTTCAAGCATGCGGTCTTGTCCTAGTTCCAATAGTATTAGAAGTGAAAAAGAGTCTGTGTCTCTTGAGAGTGAAATTGATGCTGAGAATCGAGCTCAGATCCAGCAAATGTCAGCTGAGGAGATTGCAGAAGCCCAGGCTGAGATAATGGAGAAGATGAGCCCTGCATTACTAAAAGCACTACAGAAGAGGGGGCAGGATAAATTGAAGAAACTAAAATCTGAAGTGGGTACTGGCTCAGACTCTGTGAATGGACATGTTCAGAGTCCTCAGGATGCAAAACATCTGCACACAGAGGATGGCATCACTCAAACAGTGATTGCGCCGCCATCCAAAGAAAAGCTAGATGATGAGAAAATTAGCACAAAGACTTCAACCACCGCTAGTAGTAGCGCATGGAATGCTTGGAGCAATAGAGTTGAGGCTGTTAGGGAGCTACGATTTTCCTTGGCTGGGGATGTTGTTGATTCTGAACGTGTATCAGTCTATGACAATGTCAATGAACGAGACTATCTACGGACCGAGGGAGATCCTGGTGCTTCCGGTTATACAATTAAAGAAGCAGTGGCACTCACTAGAAGTGTGATTCCTGGACAAAGAGCCCTTGCATTGCATCTCCTTTCGTCTGTGCTTGATAAGGCATTACACTATATTTGCAAAGACAGAACAGGGTATATGACAAAAAATGAGAACAAAGTTGACAAATCAGTTGACTGGGAAGCTGTTTGGGCTTTTGCACTGGGCCCAGAACCTGAGCTTGTGTTGTCACTTAGGATATGTCTTGATGATAACCACAATTCTGTAGTTCTGGCCTGCACAAAAGTTGTTCAATCTGTATTGAGTTATGATGCAAATGAGAACTACTGTGATATGTCAGAGAAGATAGCAACTTGTGACATGGATATTTGCACGGCTCCAGTTTTTAGGAGCAGACCAGATATTAATGATGGATTCCTTCAAGGGGGTTTCTGGAAGTACAGTGCCAAACCTTCTAATATTCTTCCTTTCAGCGATGATTCAATGGATAATGAGACTGAAGGAAAACATACTATTCAAGACGATATAGTGGTTGCTGCGCAAGATTTTACTGTAGGTCTAGTTCGCATGGGAATCCTTCCTAGGCTTCGTTATCTTTTGGAGAAAGATCCTACAACAGCTTTAGAAGAATGTATCATTTCTATACTGATTGCTATAGCGAGGCATTCACCTACATGTGCTAATGCTGTACTGAAATGTGAAAGACTTGTTCAGACAATTGTGAATAGATTTACTGCTGACAATTTTGAACTTCGATCTTCTATGACTAAATCTGTAAAACTCTTGAAGGTGTTTGCTCGGTTAGACCAGAAAACTTGTTTAGAGTTTATAAAGAAAGGGTATTTTCAGGCTATGACTTGGAATTTATATCAAAGTCCTTCCTCCGTTGACCACTGGCTAAGGCTAGGGAAGGAAAAATGTAAACTCACATCTGCTCTGATTGTTGAACAAATGCGTTTCTGGAGGGTCTGCATTCAATATGGATATTGTGTGTCTTACTTCTTGGAAATGTTCCCTGCCTTGTGTTTTTGGTTGAATCCACCTTCATTTGAAAAACTTGTTGAAAACGATGTTTTGGATGAATCTACTTCCATCTCTAGGGAGGCATACCTTGTTCTGGAGTCTTTGGCTGGAAGGCTTCCTAATCTATTTTCAAAGCAGTGTCTAAACAACCAACTTCCAGAGTCTGCTGGTGACACCGAGGTATGGTCTTGGAATTATGTTGGTCCAATGGTTGACTTAGCCATAAAGTGGATAGCAAGCAGAAGTGATCCAGAAGTATCCAAGTTCTTTGAGGGACAGAAAGAAGGAAGATGTGACTTTCCTTTCCGAGATCTTTCTGCAACTCCTTTGTTGTGGGTGTATGCTGCTGTGACTCGCATGCTTTTCAGAGTGCTTGAAAGAATGACATGGGGGGATACTATCAGCTCTTTTGAAACTGAAGGGCATGTGCCATGGCTTCCAGAATTTGTACCTAAGATTGGACTTGAGTTGATCAAATATTGGTTTTTGGGCTTTTCTGCATCCTTTGGGGCAAAATTTGGAAGAGATTCTGAAGGTGAATCTTTTATGAAGGAACTAGTTTATTTGAGGCAGAAGGATGATATTGAAATGTCTTTAGCTTCCACCTGTTGTCTAAATGGAATGGTCAAGATTATTACTACAATTGATAATCTGATACTGTCTGCCAAAGCTGGCATCTGTAGTCTCCCACGCCAAGAACAAAGTCTCTCAAAAGAAGGAAAAGTGCTTGAGGACGGCATTGTTAATGGGTGTTTGGTTGAGTTAAGGTATATGCTTGATGCTTTCATGTTTTCAGTTTCTTCAGGGTGGCACCACATACAGTCCATTGAGTCATTTGGCAGAGGAGGACCAGTTCCAGGGGCAGGAATTGGATGGGGTGCCCCAAGTGGAGGATTTTGGTCAGCAACATTTTTATTGGCACAAATAGATGCAAAATTTCTCGTCTCTTTGCTGGAAATTTTTGAAAATGCGTCTAAAGGTGTTGTGACTGAAGAAACAACCTTCATTATCCAAAGGGTGAATGCTGGCTTGGGATTGTGTTTAACTGCAGGACCTAGAGAAAAGGTTGTTGTAGAAAAGGCATTGGATCTCTTGTTCCATGTCTCTGTTTTGAAGAACCTTGATCTCTGCATACATAATTTTCTCTTCAATAGAAGGGGTAGAACTTTTGGCTGGCAACATGAAGAAGAGGATTACATGCACTTAAGAAGAATGTTATCATCTCATTTCAGGAGCAGATGGTTGTCTGTAAAGGTGAAGTCTAAATCTGTGGATGGCAGTAGTTCCTCTGGCATTAAGACCTCTCCAAAGGTTGGTGCTTGTTTGGAAACCATATATGAGGATTCAGACATGTCTTCCATGACAAGTCCGTGCTGTAATTCTTTAATGATAGAATGGGCTCACCAGAAACTACCACTTCCAGTTCACTTTTACCTTAGTCCAATCTCAACAATTTTCCATAGCAAGCGGGCTGGTACTAAAAAAGTTGATGATGTACTACATGATCCATCTTATCTGATTGAAGTTGCCAAATGTGGACTTTTCTTTGTTTTAGGTGTTGAAGCAATGTCCATTTTTCATGGCACTGACATTCCTTCTCCTGTTGAACAAGTATCATTGACATGGAAGTTACATTCCTTATCTGTCAATTTCCTTGTTGGAATGGAGATACTTGAACAAGATCGGAGCAGGGTTACTTTTGAAGCTTTGCAGGATCTTTATGGTGAGCTTCTTGATAAGGCAAGGTTAAACCAAAGTAAAGAAGTTATTTCAAATGATAAAAAGCATCTTGAGTTTCTGAGGTTCCAAACTGAGATTCATGAAAGTTACTCAACTTTTCTTGAAGAACTTGTGGAGCAGTTTTCTGCTGTTTCTTATGGTGATGTTATTTTTGGCCGGCAAGTTTCACTTTATCTACACCGTTATGTTGAAACTTCCATTCGACTTGCTGCCTGGAATACACTGTCCAATGCTCGTGTTCTTGAGCTTTTGCCACCTTTAGAAAAATGCTTTTCTGGTGCTGAAGGATACCTTGAACCTGCTGAGGATAATGAAGCCATTTTGGAGGCTTATACGAAGTCGTGGGTTTCTGATGCCCTTGACAGGGCTGCAATTCGAGGATCAGTTGCATATACTCTTGTTGTCCATCATCTTTCCTCCTTTATATTTCATGCCTGTCCCATGGATAAGTTATTGCTGCGAAACAGACTTGCTAGGTCTCTGTTGCGAGATTATGCTGGGAAACAGCAACACGAGGGTATGTTACTGAACCTCATTCACCATAACAAGCCGCCACCATCTGTCATGGGAGAGGAGCTGAATGGTGGTGTACTTTCTGAAAGGAATTGGTTAGAGTCCAGATTAAAAGTATTGGTTGAGGCTTGTGAGGGAAATTCCTCTCTTTTGATAGTAGTAGAGAAGTTAAAGGCTGCTGTAGAAAAGAGTTCATAG
Predicted protein sequences of Glyma01g08043
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g08043.1 sequence type=predicted peptide gene model=Glyma01g08043 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MENQKGKGGEQPKKKVVNTSSLQINQNDSFHLVGSIVEKGISDSHNNNPTTTPFHFFPKPTVLPFPVARHRSHGPHWRPLSSKGNDDGEGDDNVEDEEDKNFQEFEKVSAFAMPVQRRRKKGLDFRKWKEITRDDSSSMGKETEEDVSSFSQTTGKKNKKGSKSTYKKTSSSDDNVISPMKVDTKPLLDNSDGGFINSTTTMEVDTSNKVNHQAKVKYTRIFDDKGQNESVPGLDQISSDRMADYNFGSLDLQRPGQTDLTSSMRSCPSSNSIRSEKESVSLESEIDAENRAQIQQMSAEEIAEAQAEIMEKMSPALLKALQKRGQDKLKKLKSEVGTGSDSVNGHVQSPQDAKHLHTEDGITQTVIAPPSKEKLDDEKISTKTSTTASSSAWNAWSNRVEAVRELRFSLAGDVVDSERVSVYDNVNERDYLRTEGDPGASGYTIKEAVALTRSVIPGQRALALHLLSSVLDKALHYICKDRTGYMTKNENKVDKSVDWEAVWAFALGPEPELVLSLRICLDDNHNSVVLACTKVVQSVLSYDANENYCDMSEKIATCDMDICTAPVFRSRPDINDGFLQGGFWKYSAKPSNILPFSDDSMDNETEGKHTIQDDIVVAAQDFTVGLVRMGILPRLRYLLEKDPTTALEECIISILIAIARHSPTCANAVLKCERLVQTIVNRFTADNFELRSSMTKSVKLLKVFARLDQKTCLEFIKKGYFQAMTWNLYQSPSSVDHWLRLGKEKCKLTSALIVEQMRFWRVCIQYGYCVSYFLEMFPALCFWLNPPSFEKLVENDVLDESTSISREAYLVLESLAGRLPNLFSKQCLNNQLPESAGDTEVWSWNYVGPMVDLAIKWIASRSDPEVSKFFEGQKEGRCDFPFRDLSATPLLWVYAAVTRMLFRVLERMTWGDTISSFETEGHVPWLPEFVPKIGLELIKYWFLGFSASFGAKFGRDSEGESFMKELVYLRQKDDIEMSLASTCCLNGMVKIITTIDNLILSAKAGICSLPRQEQSLSKEGKVLEDGIVNGCLVELRYMLDAFMFSVSSGWHHIQSIESFGRGGPVPGAGIGWGAPSGGFWSATFLLAQIDAKFLVSLLEIFENASKGVVTEETTFIIQRVNAGLGLCLTAGPREKVVVEKALDLLFHVSVLKNLDLCIHNFLFNRRGRTFGWQHEEEDYMHLRRMLSSHFRSRWLSVKVKSKSVDGSSSSGIKTSPKVGACLETIYEDSDMSSMTSPCCNSLMIEWAHQKLPLPVHFYLSPISTIFHSKRAGTKKVDDVLHDPSYLIEVAKCGLFFVLGVEAMSIFHGTDIPSPVEQVSLTWKLHSLSVNFLVGMEILEQDRSRVTFEALQDLYGELLDKARLNQSKEVISNDKKHLEFLRFQTEIHESYSTFLEELVEQFSAVSYGDVIFGRQVSLYLHRYVETSIRLAAWNTLSNARVLELLPPLEKCFSGAEGYLEPAEDNEAILEAYTKSWVSDALDRAAIRGSVAYTLVVHHLSSFIFHACPMDKLLLRNRLARSLLRDYAGKQQHEGMLLNLIHHNKPPPSVMGEELNGGVLSERNWLESRLKVLVEACEGNSSLLIVVEKLKAAVEKSS*