Glyma01g08043 - SoyBase

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Report for Sequence Feature Glyma01g08043

Feature Type:	gene_model
Chromosome:	Gm01
Start:	9021977
stop:	9042121
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g08043

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38440	AT	Annotation by Michelle Graham. TAIR10: LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). \| chr4:17989115-17994549 FORWARD LENGTH=1465	SoyBase	E_val: 0	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG4732	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21483	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21483:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08620	PFAM	RPAP1-like, C-terminal	JGI		ISS
PF08621	PFAM	RPAP1-like, N-terminal	JGI		ISS
UniRef100_G7JWY0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase II-associated protein n=1 Tax=Medicago truncatula RepID=G7JWY0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337516	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337516 related cluster n=1 Tax=unknown RepID=UPI0002337516	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g08043

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g08043 not represented in the dataset	Glyma01g08043 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g08043

Paralog	Evidence	Comments
Glyma02g13361	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g08043 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g063600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g08043

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g08043

Limit To All Plant Sequences

>Glyma01g08043.1   sequence type=CDS   gene model=Glyma01g08043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATCAAAAGGGCAAAGGAGGAGAGCAACCCAAGAAGAAGGTGGTGAACACGAGCTCCCTCCAAATAAACCAAAACGATTCCTTTCACTTGGTTGGTTCCATCGTGGAAAAGGGTATCTCTGATTCACACAACAACAACCCCACAACAACACCCTTCCATTTTTTCCCCAAGCCCACTGTTCTTCCTTTCCCCGTTGCGCGCCATCGTTCACATGGCCCTCATTGGCGTCCACTGAGCAGTAAAGGGAATGATGATGGTGAGGGTGATGATAATGTTGAGGATGAAGAAGATAAAAATTTCCAGGAGTTTGAAAAAGTTTCAGCCTTTGCCATGCCGGTACAAAGGAGGAGGAAAAAGGGTTTGGATTTTAGAAAATGGAAAGAGATCACTCGGGATGATAGTTCTTCCATGGGGAAGGAAACAGAGGAAGATGTGTCAAGCTTTAGCCAAACTACAGGGAAAAAGAACAAAAAGGGCAGTAAGAGTACATACAAGAAAACCTCATCTTCAGATGATAATGTCATTTCTCCGATGAAAGTGGATACTAAACCACTGTTAGATAACTCAGATGGTGGGTTTATCAATTCAACTACGACTATGGAAGTAGATACATCAAATAAGGTAAATCACCAGGCAAAAGTTAAATACACCAGAATTTTTGATGACAAGGGACAAAATGAATCTGTGCCTGGATTGGACCAAATTTCCTCTGATAGGATGGCTGATTACAATTTTGGATCCCTAGATTTGCAAAGGCCAGGGCAAACTGACTTGACTTCAAGCATGCGGTCTTGTCCTAGTTCCAATAGTATTAGAAGTGAAAAAGAGTCTGTGTCTCTTGAGAGTGAAATTGATGCTGAGAATCGAGCTCAGATCCAGCAAATGTCAGCTGAGGAGATTGCAGAAGCCCAGGCTGAGATAATGGAGAAGATGAGCCCTGCATTACTAAAAGCACTACAGAAGAGGGGGCAGGATAAATTGAAGAAACTAAAATCTGAAGTGGGTACTGGCTCAGACTCTGTGAATGGACATGTTCAGAGTCCTCAGGATGCAAAACATCTGCACACAGAGGATGGCATCACTCAAACAGTGATTGCGCCGCCATCCAAAGAAAAGCTAGATGATGAGAAAATTAGCACAAAGACTTCAACCACCGCTAGTAGTAGCGCATGGAATGCTTGGAGCAATAGAGTTGAGGCTGTTAGGGAGCTACGATTTTCCTTGGCTGGGGATGTTGTTGATTCTGAACGTGTATCAGTCTATGACAATGTCAATGAACGAGACTATCTACGGACCGAGGGAGATCCTGGTGCTTCCGGTTATACAATTAAAGAAGCAGTGGCACTCACTAGAAGTGTGATTCCTGGACAAAGAGCCCTTGCATTGCATCTCCTTTCGTCTGTGCTTGATAAGGCATTACACTATATTTGCAAAGACAGAACAGGGTATATGACAAAAAATGAGAACAAAGTTGACAAATCAGTTGACTGGGAAGCTGTTTGGGCTTTTGCACTGGGCCCAGAACCTGAGCTTGTGTTGTCACTTAGGATATGTCTTGATGATAACCACAATTCTGTAGTTCTGGCCTGCACAAAAGTTGTTCAATCTGTATTGAGTTATGATGCAAATGAGAACTACTGTGATATGTCAGAGAAGATAGCAACTTGTGACATGGATATTTGCACGGCTCCAGTTTTTAGGAGCAGACCAGATATTAATGATGGATTCCTTCAAGGGGGTTTCTGGAAGTACAGTGCCAAACCTTCTAATATTCTTCCTTTCAGCGATGATTCAATGGATAATGAGACTGAAGGAAAACATACTATTCAAGACGATATAGTGGTTGCTGCGCAAGATTTTACTGTAGGTCTAGTTCGCATGGGAATCCTTCCTAGGCTTCGTTATCTTTTGGAGAAAGATCCTACAACAGCTTTAGAAGAATGTATCATTTCTATACTGATTGCTATAGCGAGGCATTCACCTACATGTGCTAATGCTGTACTGAAATGTGAAAGACTTGTTCAGACAATTGTGAATAGATTTACTGCTGACAATTTTGAACTTCGATCTTCTATGACTAAATCTGTAAAACTCTTGAAGGTGTTTGCTCGGTTAGACCAGAAAACTTGTTTAGAGTTTATAAAGAAAGGGTATTTTCAGGCTATGACTTGGAATTTATATCAAAGTCCTTCCTCCGTTGACCACTGGCTAAGGCTAGGGAAGGAAAAATGTAAACTCACATCTGCTCTGATTGTTGAACAAATGCGTTTCTGGAGGGTCTGCATTCAATATGGATATTGTGTGTCTTACTTCTTGGAAATGTTCCCTGCCTTGTGTTTTTGGTTGAATCCACCTTCATTTGAAAAACTTGTTGAAAACGATGTTTTGGATGAATCTACTTCCATCTCTAGGGAGGCATACCTTGTTCTGGAGTCTTTGGCTGGAAGGCTTCCTAATCTATTTTCAAAGCAGTGTCTAAACAACCAACTTCCAGAGTCTGCTGGTGACACCGAGGTATGGTCTTGGAATTATGTTGGTCCAATGGTTGACTTAGCCATAAAGTGGATAGCAAGCAGAAGTGATCCAGAAGTATCCAAGTTCTTTGAGGGACAGAAAGAAGGAAGATGTGACTTTCCTTTCCGAGATCTTTCTGCAACTCCTTTGTTGTGGGTGTATGCTGCTGTGACTCGCATGCTTTTCAGAGTGCTTGAAAGAATGACATGGGGGGATACTATCAGCTCTTTTGAAACTGAAGGGCATGTGCCATGGCTTCCAGAATTTGTACCTAAGATTGGACTTGAGTTGATCAAATATTGGTTTTTGGGCTTTTCTGCATCCTTTGGGGCAAAATTTGGAAGAGATTCTGAAGGTGAATCTTTTATGAAGGAACTAGTTTATTTGAGGCAGAAGGATGATATTGAAATGTCTTTAGCTTCCACCTGTTGTCTAAATGGAATGGTCAAGATTATTACTACAATTGATAATCTGATACTGTCTGCCAAAGCTGGCATCTGTAGTCTCCCACGCCAAGAACAAAGTCTCTCAAAAGAAGGAAAAGTGCTTGAGGACGGCATTGTTAATGGGTGTTTGGTTGAGTTAAGGTATATGCTTGATGCTTTCATGTTTTCAGTTTCTTCAGGGTGGCACCACATACAGTCCATTGAGTCATTTGGCAGAGGAGGACCAGTTCCAGGGGCAGGAATTGGATGGGGTGCCCCAAGTGGAGGATTTTGGTCAGCAACATTTTTATTGGCACAAATAGATGCAAAATTTCTCGTCTCTTTGCTGGAAATTTTTGAAAATGCGTCTAAAGGTGTTGTGACTGAAGAAACAACCTTCATTATCCAAAGGGTGAATGCTGGCTTGGGATTGTGTTTAACTGCAGGACCTAGAGAAAAGGTTGTTGTAGAAAAGGCATTGGATCTCTTGTTCCATGTCTCTGTTTTGAAGAACCTTGATCTCTGCATACATAATTTTCTCTTCAATAGAAGGGGTAGAACTTTTGGCTGGCAACATGAAGAAGAGGATTACATGCACTTAAGAAGAATGTTATCATCTCATTTCAGGAGCAGATGGTTGTCTGTAAAGGTGAAGTCTAAATCTGTGGATGGCAGTAGTTCCTCTGGCATTAAGACCTCTCCAAAGGTTGGTGCTTGTTTGGAAACCATATATGAGGATTCAGACATGTCTTCCATGACAAGTCCGTGCTGTAATTCTTTAATGATAGAATGGGCTCACCAGAAACTACCACTTCCAGTTCACTTTTACCTTAGTCCAATCTCAACAATTTTCCATAGCAAGCGGGCTGGTACTAAAAAAGTTGATGATGTACTACATGATCCATCTTATCTGATTGAAGTTGCCAAATGTGGACTTTTCTTTGTTTTAGGTGTTGAAGCAATGTCCATTTTTCATGGCACTGACATTCCTTCTCCTGTTGAACAAGTATCATTGACATGGAAGTTACATTCCTTATCTGTCAATTTCCTTGTTGGAATGGAGATACTTGAACAAGATCGGAGCAGGGTTACTTTTGAAGCTTTGCAGGATCTTTATGGTGAGCTTCTTGATAAGGCAAGGTTAAACCAAAGTAAAGAAGTTATTTCAAATGATAAAAAGCATCTTGAGTTTCTGAGGTTCCAAACTGAGATTCATGAAAGTTACTCAACTTTTCTTGAAGAACTTGTGGAGCAGTTTTCTGCTGTTTCTTATGGTGATGTTATTTTTGGCCGGCAAGTTTCACTTTATCTACACCGTTATGTTGAAACTTCCATTCGACTTGCTGCCTGGAATACACTGTCCAATGCTCGTGTTCTTGAGCTTTTGCCACCTTTAGAAAAATGCTTTTCTGGTGCTGAAGGATACCTTGAACCTGCTGAGGATAATGAAGCCATTTTGGAGGCTTATACGAAGTCGTGGGTTTCTGATGCCCTTGACAGGGCTGCAATTCGAGGATCAGTTGCATATACTCTTGTTGTCCATCATCTTTCCTCCTTTATATTTCATGCCTGTCCCATGGATAAGTTATTGCTGCGAAACAGACTTGCTAGGTCTCTGTTGCGAGATTATGCTGGGAAACAGCAACACGAGGGTATGTTACTGAACCTCATTCACCATAACAAGCCGCCACCATCTGTCATGGGAGAGGAGCTGAATGGTGGTGTACTTTCTGAAAGGAATTGGTTAGAGTCCAGATTAAAAGTATTGGTTGAGGCTTGTGAGGGAAATTCCTCTCTTTTGATAGTAGTAGAGAAGTTAAAGGCTGCTGTAGAAAAGAGTTCATAG

Predicted protein sequences of Glyma01g08043

Limit To All Plant Sequences

>Glyma01g08043.1   sequence type=predicted peptide   gene model=Glyma01g08043   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENQKGKGGEQPKKKVVNTSSLQINQNDSFHLVGSIVEKGISDSHNNNPTTTPFHFFPKPTVLPFPVARHRSHGPHWRPLSSKGNDDGEGDDNVEDEEDKNFQEFEKVSAFAMPVQRRRKKGLDFRKWKEITRDDSSSMGKETEEDVSSFSQTTGKKNKKGSKSTYKKTSSSDDNVISPMKVDTKPLLDNSDGGFINSTTTMEVDTSNKVNHQAKVKYTRIFDDKGQNESVPGLDQISSDRMADYNFGSLDLQRPGQTDLTSSMRSCPSSNSIRSEKESVSLESEIDAENRAQIQQMSAEEIAEAQAEIMEKMSPALLKALQKRGQDKLKKLKSEVGTGSDSVNGHVQSPQDAKHLHTEDGITQTVIAPPSKEKLDDEKISTKTSTTASSSAWNAWSNRVEAVRELRFSLAGDVVDSERVSVYDNVNERDYLRTEGDPGASGYTIKEAVALTRSVIPGQRALALHLLSSVLDKALHYICKDRTGYMTKNENKVDKSVDWEAVWAFALGPEPELVLSLRICLDDNHNSVVLACTKVVQSVLSYDANENYCDMSEKIATCDMDICTAPVFRSRPDINDGFLQGGFWKYSAKPSNILPFSDDSMDNETEGKHTIQDDIVVAAQDFTVGLVRMGILPRLRYLLEKDPTTALEECIISILIAIARHSPTCANAVLKCERLVQTIVNRFTADNFELRSSMTKSVKLLKVFARLDQKTCLEFIKKGYFQAMTWNLYQSPSSVDHWLRLGKEKCKLTSALIVEQMRFWRVCIQYGYCVSYFLEMFPALCFWLNPPSFEKLVENDVLDESTSISREAYLVLESLAGRLPNLFSKQCLNNQLPESAGDTEVWSWNYVGPMVDLAIKWIASRSDPEVSKFFEGQKEGRCDFPFRDLSATPLLWVYAAVTRMLFRVLERMTWGDTISSFETEGHVPWLPEFVPKIGLELIKYWFLGFSASFGAKFGRDSEGESFMKELVYLRQKDDIEMSLASTCCLNGMVKIITTIDNLILSAKAGICSLPRQEQSLSKEGKVLEDGIVNGCLVELRYMLDAFMFSVSSGWHHIQSIESFGRGGPVPGAGIGWGAPSGGFWSATFLLAQIDAKFLVSLLEIFENASKGVVTEETTFIIQRVNAGLGLCLTAGPREKVVVEKALDLLFHVSVLKNLDLCIHNFLFNRRGRTFGWQHEEEDYMHLRRMLSSHFRSRWLSVKVKSKSVDGSSSSGIKTSPKVGACLETIYEDSDMSSMTSPCCNSLMIEWAHQKLPLPVHFYLSPISTIFHSKRAGTKKVDDVLHDPSYLIEVAKCGLFFVLGVEAMSIFHGTDIPSPVEQVSLTWKLHSLSVNFLVGMEILEQDRSRVTFEALQDLYGELLDKARLNQSKEVISNDKKHLEFLRFQTEIHESYSTFLEELVEQFSAVSYGDVIFGRQVSLYLHRYVETSIRLAAWNTLSNARVLELLPPLEKCFSGAEGYLEPAEDNEAILEAYTKSWVSDALDRAAIRGSVAYTLVVHHLSSFIFHACPMDKLLLRNRLARSLLRDYAGKQQHEGMLLNLIHHNKPPPSVMGEELNGGVLSERNWLESRLKVLVEACEGNSSLLIVVEKLKAAVEKSS*

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