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Report for Sequence Feature Glyma01g07910

Feature Type:gene_model
Chromosome:Gm01
Start:8838723
stop:8843110
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g07910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24240AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141 SoyBaseE_val: 0ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010359GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF784Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_G7JZ57UniRef Annotation by Michelle Graham. Best UniRef hit: Receptor-like protein kinase n=2 Tax=Medicago truncatula RepID=G7JZ57_MEDTR SoyBaseE_val: 0ISS
UniRef100_G7JZ57UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=2 Tax=Medicago truncatula RepID=G7JZ57_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g07910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g07910
ParalogEvidenceComments
Glyma02g13320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g07910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g062900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g07910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g07910
>Glyma01g07910.2   sequence type=CDS   gene model=Glyma01g07910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCACCTCGAGGCAATCCTTGTACATCTCTTCTCCTTCTCCTTCTTCTTCATTGTTTTGTATCATTCTCCTCCAACTTACATTTCTCTATGGCCTTGCCTTCTCTGCAAATCATGAAGCCTCAACACTCTTCACATGGCTCCGTAGTTCTTCTTCTGCATCACCACCACCACCCCCTCCTTTCTCCAACTGGAACCTCCTTGATCCAAATCCATGCAACTGGACATCCATAACATGCTCCTCACTAGGCCTTGTCACAGAAATTACCATACAATCCATCCCTCTAGAGCTTCCTATACCCTCCAACCTCTCTTCATTTCACTCTCTCCAAAAGCTTGTTATTTCTGATGCCAATCTCACTGGAGCCATCCCTTCAGACATTGGTGATTGTTCTTCCCTCACTGTTATTGACCTCAGCTCCAACAACCTTGTTGGCTCTATTCCTGCCAGCATTGGCAAGCTCCACAACCTTCAGAACTTGTCCTTGAACTCTAACCAGCTCTCTGGAAAAATCCCTGTGGAGTTAAGCAACTGCATTGGCCTAAAAAATCTTCTCCTTTTTGATAATCAGATAAGTGGGACTATTCCACCTGAGCTGGGAAAGTTTTCACAACTTGAGTCTCTAAGAGCAGGAGGGAACAAAGATATTGTTGGGAAGATTCCTGAAGAGATTGGAGAATGCGGCAATTTGACTGTGTTGGGGTTGGCAGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGGAGACTTAAAAGGCTTCAGACACTGTCCATCTATACTACTATGCTGTCTGGTGAGATTCCACCCGAGTTAGGTAACTGTTCTGAGCTTGTTGACTTGTTCTTATATGAAAATAGCCTATCAGGGTCTATTCCATCTGAGCTTGGTAGGCTCAAGAAGCTGGAACAGTTGTTTTTGTGGCAGAATGGTCTTGTTGGGGCTATTCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAAATTGATTTCTCTTTGAATTCTCTGTCTGGGACTATACCTGTGCCTTTGGGGGGTCTTTTGGAGCTTGAGGAGTTTATGATTAGTAATAACAATGTGTCTGGTTCAATCCCTTCCAGTCTTTCAAATGCTAAAAACCTTCAGCAGTTGCAAGTTGACACAAACCAGCTCTCAGGGTTGATTCCACCAGAGCTTGGGCAGTTGTCAAGCCTCATGGTGTTCTTTGCTTGGCAGAACCAGCTTGAGGGAAGCATTCCCTCCTCTTTGGGGAACTGTAGTAACCTTCAAGCACTCGACTTGTCGCGAAACACGCTCACCGGTAGTATTCCTGTTAGCCTATTCCAGCTCCAAAACCTCACAAAACTACTTCTGATTGCCAATGACATATCTGGTTTCATACCAAATGAAATAGGCAGTTGCAGCTCTCTGATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGTAGCATTCCCAAGACAATAGGGAACCTTAAGAGCTTGAACTTTTTAGACCTCTCCGGGAACCGCCTCTCTGGGCCCGTGCCTGATGAGATTGGAAGCTGCACTGAACTGCAAATGATAGATTTCAGCTGCAACAACTTAGAAGGTCCTTTGCCTAATTCTTTGTCTTCACTATCTGCAGTTCAGGTATTGGATGCATCTTCCAACAAGTTTTCAGGTCCTCTACTGGCGAGTTTGGGCCATCTTGTTTCTCTGAGTAAGCTTATCCTTAGCAATAACTTATTTTCTGGACCTATTCCTGCATCATTGAGCCTATGTTTAAATCTCCAACTGCTTGATCTTAGTAGCAACAAGCTCAGTGGAAGCATACCAGCCGAACTCGGCCGCATTGAGACTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTCAGTGGAATAATCCCAGCTCAGATGTTTGCTCTTAACAAGCTTTCCATATTGGACATCTCACACAACCAATTGGAAGGAGATTTGCAACCTCTTGCAGAGTTAGACAACCTTGTCTCCCTCAATGTTTCTTACAACAAATTTTCTGGCTGTCTTCCAGATAACAAACTTTTCAGGCAGTTGGCATCAAAAGACTACAGTGAAAATCAAGGGCTCTCATGCTTTATGAAGGATTCTGGCAAGACTGGTGAGACATTGAATGGAAATGATGTAAGGAACTCGCGAAGGATTAAGCTAGCCATTGGATTGCTGATAGCCTTGACAGTAATAATGATTGCTATGGGGATAACTGCTGTGATCAAAGCAAGAAGAACCATTAGAGATGATGATTCGGAATTGGGGAACTCGTGGCCGTGGCAATGCATACCTTTCCAGAAGCTAAACTTTTCAGTGAATCAAGTACTGAGATGTTTAATTGACAGAAACATAATTGGGAAGGGGTGTTCTGGTGTTGTTTATAAAGCTGCAATGGATAATGGTGAAGTCATTGCTGTGAAGAAATTGTGGCCCACAACAATTGATGAAGGAGAGGCATTTAAGGAAGAAAAAAATGGAGTTCGTGACTCTTTCTCGACTGAGGTCAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGTTGGAACAGAAAAACAAGACTGCTTATTTTTGATTACATGCCGAATGGAAGTTTAAGTAGTCTACTTCATGAGAGGACTGGAAACTCTTTGGAATGGAAACTTAGGTACAGAATCTTGTTAGGCGCTGCAGAAGGCCTTGCTTATCTGCATCATGACTGTGTCCCTCCTATAGTTCACAGAGATATCAAAGCCAATAACATCCTCATTGGTCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAACTTGTCGATGATGGTGATTTCGGTCGTTCCTCCAATACAGTTGCTGGCTCCTATGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGACAAGAGTGATGTTTATAGCTATGGCATAGTTCTATTAGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAAGGCTCTTGAAGTGCTTGATCCTAGCCTACTCTCTAGACCAGAATCAGAACTAGAGGAAATGATGCAGGCATTGGGAATAGCCTTGTTGTGTGTGAACTCATCCCCAGATGAAAGGCCAACTATGAGAGATATCGTGGCGATGCTCAAGGAGATAAAGCATGAAAGGGAGGAGTATGGAAAGTTTGATGTGCTTCTAAAAGGGCCTCCTGCGAATGGTGCATGTTGGAATAAAAGCATTGGTGGAGTTCTGCCAACATCTTCATCAGTACCAGTCATGCAAACTTTGAACACAAAGCAATAA
Predicted protein sequences of Glyma01g07910
>Glyma01g07910.2   sequence type=predicted peptide   gene model=Glyma01g07910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTSRQSLYISSPSPSSSLFCIILLQLTFLYGLAFSANHEASTLFTWLRSSSSASPPPPPPFSNWNLLDPNPCNWTSITCSSLGLVTEITIQSIPLELPIPSNLSSFHSLQKLVISDANLTGAIPSDIGDCSSLTVIDLSSNNLVGSIPASIGKLHNLQNLSLNSNQLSGKIPVELSNCIGLKNLLLFDNQISGTIPPELGKFSQLESLRAGGNKDIVGKIPEEIGECGNLTVLGLADTRISGSLPASLGRLKRLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSIPSELGRLKKLEQLFLWQNGLVGAIPEEIGNCTSLRKIDFSLNSLSGTIPVPLGGLLELEEFMISNNNVSGSIPSSLSNAKNLQQLQVDTNQLSGLIPPELGQLSSLMVFFAWQNQLEGSIPSSLGNCSNLQALDLSRNTLTGSIPVSLFQLQNLTKLLLIANDISGFIPNEIGSCSSLIRLRLGNNRITGSIPKTIGNLKSLNFLDLSGNRLSGPVPDEIGSCTELQMIDFSCNNLEGPLPNSLSSLSAVQVLDASSNKFSGPLLASLGHLVSLSKLILSNNLFSGPIPASLSLCLNLQLLDLSSNKLSGSIPAELGRIETLEIALNLSCNSLSGIIPAQMFALNKLSILDISHNQLEGDLQPLAELDNLVSLNVSYNKFSGCLPDNKLFRQLASKDYSENQGLSCFMKDSGKTGETLNGNDVRNSRRIKLAIGLLIALTVIMIAMGITAVIKARRTIRDDDSELGNSWPWQCIPFQKLNFSVNQVLRCLIDRNIIGKGCSGVVYKAAMDNGEVIAVKKLWPTTIDEGEAFKEEKNGVRDSFSTEVKTLGSIRHKNIVRFLGCCWNRKTRLLIFDYMPNGSLSSLLHERTGNSLEWKLRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITDKSDVYSYGIVLLEVLTGKQPIDPTIPDGLHVVDWVRQKKALEVLDPSLLSRPESELEEMMQALGIALLCVNSSPDERPTMRDIVAMLKEIKHEREEYGKFDVLLKGPPANGACWNKSIGGVLPTSSSVPVMQTLNTKQ*






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