SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11080 | AT | Annotation by Michelle Graham. TAIR10: HMG (high mobility group) box protein | chr4:6760898-6763272 REVERSE LENGTH=446 | SoyBase | E_val: 8.00E-98 | ISS |
| GO:0000793 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: condensed chromosome | SoyBase | N/A | ISS |
| GO:0000794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: condensed nuclear chromosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0381 | KOG | HMG box-containing protein | JGI | ISS | |
| PTHR13711 | Panther | SWI/SNF-RELATED CHROMATIN BINDING PROTEIN | JGI | ISS | |
| PF00505 | PFAM | HMG (high mobility group) box | JGI | ISS | |
| UniRef100_B9GXG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: High mobility group family n=1 Tax=Populus trichocarpa RepID=B9GXG3_POPTR | SoyBase | E_val: 3.00E-102 | ISS |
| UniRef100_UPI0002337509 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337509 related cluster n=1 Tax=unknown RepID=UPI0002337509 | SoyBase | E_val: 3.00E-169 | ISS |
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Glyma01g07470 not represented in the dataset |
Glyma01g07470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g060600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g07470.2 sequence type=CDS gene model=Glyma01g07470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCTCTGAGAAGAAACGACCTTCTCCACCTTACATTTTGTGGATGAAAGACCAACGGAATGAGATCAAGAAAGTGAACCCAGAGGCCGGATTTAAGGAAATTTCAACCATGCTAGGTGTTAAATGGAAGACTGTTACTGCAGAAGAGAAGAAGCCTTATGAGGGGATATACCATGCGGAGAAAGAAGCTTATTTGCAGGTGATTGCAAAGGAAAAACATGAAACTGAGTCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGGACTGCGATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGGCCATTTCATGAAGGAAGAGGAGGACCATATGAAAGTTCAAAAACAAGAAGCATTGCAACTGCTTAAGAAGAAGGAGAAAATTGAAAATATAATCAAGTTTTTTTCTTCTAACCTTCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAAATGCAACATACCTCTCTTTTGCAACTCTCATTCTCTTCATGCAGTTTTTATTAA
>Glyma01g07470.2 sequence type=predicted peptide gene model=Glyma01g07470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CSEKKRPSPPYILWMKDQRNEIKKVNPEAGFKEISTMLGVKWKTVTAEEKKPYEGIYHAEKEAYLQVIAKEKHETESMRLLEDEQKQRTAMELLEQYMQFKQEAEKDGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALAAENKNFLEVPKITFEEWKNMTEEQKRPYEEMAKKNKEQYALEMEAYKQKKDEEAGHFMKEEEDHMKVQKQEALQLLKKKEKIENIIKFFSSNLQKKKQNKDDKNSDPNRPKMQHTSLLQLSFSSCSFY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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