SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13860 | AT | Annotation by Michelle Graham. TAIR10: QUASIMODO2 LIKE 1 | chr1:4743754-4746256 REVERSE LENGTH=603 | SoyBase | E_val: 0 | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| PTHR10108 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR10108:SF58 | Panther | DEHYDRATION-RESPONSIVE PROTEIN-RELATED | JGI | ISS | |
| PF03141 | PFAM | Putative methyltransferase | JGI | ISS | |
| UniRef100_B9REF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9REF5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336C74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336C74 related cluster n=1 Tax=unknown RepID=UPI0002336C74 | SoyBase | E_val: 0 | ISS |
|
Glyma01g07020 not represented in the dataset |
Glyma01g07020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g12900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g057500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g07020.2 sequence type=transcript gene model=Glyma01g07020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGCTTTACCTCTTTCTAACGTCATTCCCATTTTGTACTCCTTTGTCTTTTCATTGACATCTCTCAGTTATTAGCAGGTGTTCAGCCTGAAGATTTTTTTGAAGACTTACAATTCTGGAGATCAGCTCTCAAGAACTATTGGTCTTTGCTTACACCACTAATTTTCTCCGATCATCCAAAGAGACCAGGAGATGAAGATCCATTACCTCCATTTAACATGATACGTAATGTGATGGACATGAGTACAAAATTTGGGGGGTTGAACACTGCCCTTCTAGAAGAGAAAAAATCAGTTTGGGTTATGAACGTTGTTCCTGCAACTGCTTCTAATTCACTTCCTTTTCTACTAGATAGAGGCTTTGCTGGTGTTATGCATGACTGGTGTGAACCTTTCCCTACGTACCCCCGGACATATGATATGCTTCATGCAAATGGAATTCTTTCTCATCTCACTTCAGAGAGGTGCAGCTTGATGAACTTATTCTTGGAGATGGACAGAATACTGCGTCCAGAGGGATGGGTCATTCTTTCTGATAACATGGGAGCTATAGAGATGGCTCGCACACTTGCTGCACAAGTACGTTGGGAAGCAAGGATAATTGACCTTCAGAATGGCAGTGATCAGCGGCTTCTTGTTTGCCAGAAACCATTTCTGAAAAAATGATTGGATTGACTCTGTTATGTTTCACCCTGTGGGAATGGATTGTTCAGCAGGCACAGGTTGTATTTGTATATATTGCACGGAGCCTTGACATTTTTCCATCTTTTTGCGTAATTGGGCAGGAGGATTGTGGAAGCTGTAGATTGTGGATGTTCAAGTTGAACTCAGGCTCCAATTCGTTTTATTGGTCAGAGGTGTTTGTAGTAATTCATTCATTTATATCTTGTTAGCATTTTTTGGCTTAATGATTTATTTTATTGATCATTGGACTTTGGACGTAAATGTCAACTTGTTAAACAATCACACTGATTTTTATAAGAAAGAATATGAATGGGCACGAAATATAAAAATGAATTTAAGATTGTAACACAGTTGGAGCCAGTGTTCACCATACACAGAACATTTTTCTTTTCTGTTGACGGGATATACAGAGCAACTCTTAATAAAGTATTTATCATAAATTACATAAATTATTATGAGTTGTATTACACATACAACAACTCATA
>Glyma01g07020.1 sequence type=CDS gene model=Glyma01g07020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAGCTCCTGGTTCAATAAATTGTCAATCATTATTGGCCCTAGACCTCCTGTGAACTGGTTATTCTTGTGCCTAATCAGCCTGCTTGTGCTGATTGTTGTTCTGGGTTCATCTTCTTCTAATATTGATGATCAGGCGCCTGATATTCCGGTTTCTCTCATCTACACAAACTATAGGAGGGTTAAGGAGCAGGCGGTGGTTGATTATTTAGAGTTAAGGTCTGTGGCACGGGGTGTCTCTAGACAAAGAGAATTTGATCTTTGTGGCAAGGAAAGAGAGAATTTTGTGCCTTGTTACAATGTTTCAGCCAATTTGTTAGCAGGGTTTAAAGACGGAGAGGAGTTTGACCGGCATTGTGAACTGTTAGTTGAAGCAGAGAGGTGTCTGGTTCGCCCTCCTAAGGAATATAAAATTCCCCTGCAATGGCCAGCTGGCAGGGATGTCATATGGAGTGGAAATGTGAAGATAACCAAAAACCAATTTCTTGCATCTGGAAGTATGACCAAAAGGTTAATGCTTCTAGAAGAGAATCAAATTGCTTTCCACTCAGAGGATGGACTGATCTATGACGGTATGAAAGATTACTCTCGCCAACTTGCAGAGATGATAGGGTTGGGAAGTGACAACGAGCTTCCTCAAGCTGGTGTTCGCACTATACTGGACATTAATTGTGGATTTGGTAGCTTTGCAGCTCATTTGGCATCATTGAAAATAATGACAGTTTGCATTGCTCCATATGAGGCAACAGGTAGCCAGGTTCAGTTGGCCCTTGAGAGAGGCCTTCCTGCTGTGATTGGCAACTTCGTTGCAAGACAGCTTTCATATCCTTCATTATCATATGACATGGTTCATTGTGCTCAATGTGGCATCATTTGGGATGGAAAAGATGGAAGGTTCCTTATAGAAGTTGACCGTGTTCTTAAACCTGGAGGATACTTTGTATTAACCTCACCAACAAGCAGGTCACAGGGAAGTTCATCACAAATGAAAAGGAGGAACATGTTGATGCCAATGGAAGAGCTGACCCAGCAACTCTGTTGGACTCTTCTAGCTCAGCAAGATGAGACATTCATCTGGCAGAAGACTGCTGATGTTAATTGCTATGCATATCGAAAGAAGCATGCTATACCATTATGCAAGGAAGATGATGATGCTCAGTCATATTATCGGCCTCTTCAACCATGTATAAGTGGGACCTCTAGCAAGCGCTGGATTGCAATACAGAATAGATCCTCTGGATCAGAATTGAGTGTTCAGCCTGAAGATTTTTTTGAAGACTTACAATTCTGGAGATCAGCTCTCAAGAACTATTGGTCTTTGCTTACACCACTAATTTTCTCCGATCATCCAAAGAGACCAGGAGATGAAGATCCATTACCTCCATTTAACATGATACGTAATGTGATGGACATGAGTACAAAATTTGGGGGGTTGAACACTGCCCTTCTAGAAGAGAAAAAATCAGTTTGGGTTATGAACGTTGTTCCTGCAACTGCTTCTAATTCACTTCCTTTTCTACTAGATAGAGGCTTTGCTGGTGTTATGCATGACTGGTGTGAACCTTTCCCTACGTACCCCCGGACATATGATATGCTTCATGCAAATGGAATTCTTTCTCATCTCACTTCAGAGAGGTGCAGCTTGATGAACTTATTCTTGGAGATGGACAGAATACTGCGTCCAGAGGGATGGGTCATTCTTTCTGATAACATGGGAGCTATAGAGATGGCTCGCACACTTGCTGCACAAGTACGTTGGGAAGCAAGGATAATTGACCTTCAGAATGGCAGTGATCAGCGGCTTCTTGTTTGCCAGAAACCATTTCTGAAAAAATGA >Glyma01g07020.2 sequence type=CDS gene model=Glyma01g07020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATACGTAATGTGATGGACATGAGTACAAAATTTGGGGGGTTGAACACTGCCCTTCTAGAAGAGAAAAAATCAGTTTGGGTTATGAACGTTGTTCCTGCAACTGCTTCTAATTCACTTCCTTTTCTACTAGATAGAGGCTTTGCTGGTGTTATGCATGACTGGTGTGAACCTTTCCCTACGTACCCCCGGACATATGATATGCTTCATGCAAATGGAATTCTTTCTCATCTCACTTCAGAGAGGTGCAGCTTGATGAACTTATTCTTGGAGATGGACAGAATACTGCGTCCAGAGGGATGGGTCATTCTTTCTGATAACATGGGAGCTATAGAGATGGCTCGCACACTTGCTGCACAAGTACGTTGGGAAGCAAGGATAATTGACCTTCAGAATGGCAGTGATCAGCGGCTTCTTGTTTGCCAGAAACCATTTCTGAAAAAATGA
>Glyma01g07020.1 sequence type=predicted peptide gene model=Glyma01g07020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSSWFNKLSIIIGPRPPVNWLFLCLISLLVLIVVLGSSSSNIDDQAPDIPVSLIYTNYRRVKEQAVVDYLELRSVARGVSRQREFDLCGKERENFVPCYNVSANLLAGFKDGEEFDRHCELLVEAERCLVRPPKEYKIPLQWPAGRDVIWSGNVKITKNQFLASGSMTKRLMLLEENQIAFHSEDGLIYDGMKDYSRQLAEMIGLGSDNELPQAGVRTILDINCGFGSFAAHLASLKIMTVCIAPYEATGSQVQLALERGLPAVIGNFVARQLSYPSLSYDMVHCAQCGIIWDGKDGRFLIEVDRVLKPGGYFVLTSPTSRSQGSSSQMKRRNMLMPMEELTQQLCWTLLAQQDETFIWQKTADVNCYAYRKKHAIPLCKEDDDAQSYYRPLQPCISGTSSKRWIAIQNRSSGSELSVQPEDFFEDLQFWRSALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMSTKFGGLNTALLEEKKSVWVMNVVPATASNSLPFLLDRGFAGVMHDWCEPFPTYPRTYDMLHANGILSHLTSERCSLMNLFLEMDRILRPEGWVILSDNMGAIEMARTLAAQVRWEARIIDLQNGSDQRLLVCQKPFLKK* >Glyma01g07020.2 sequence type=predicted peptide gene model=Glyma01g07020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRNVMDMSTKFGGLNTALLEEKKSVWVMNVVPATASNSLPFLLDRGFAGVMHDWCEPFPTYPRTYDMLHANGILSHLTSERCSLMNLFLEMDRILRPEGWVILSDNMGAIEMARTLAAQVRWEARIIDLQNGSDQRLLVCQKPFLKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
