Glyma01g06902 - SoyBase

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Report for Sequence Feature Glyma01g06902

Feature Type:	gene_model
Chromosome:	Gm01
Start:	7382654
stop:	7384804
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06902

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00905	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein S12C \| chrC:97999-98793 REVERSE LENGTH=123	SoyBase	E_val: 2.00E-28	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0000312	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid small ribosomal subunit	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR11652	Panther	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	JGI		ISS
PF00164	PFAM	Ribosomal protein S12	JGI		ISS
UniRef100_I6ZSR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein S12 (Fragment) n=7 Tax=core eudicotyledons RepID=I6ZSR6_MEDSA	SoyBase	E_val: 4.00E-26	ISS
UniRef100_I6ZSR6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein S12 (Fragment) n=7 Tax=core eudicotyledons RepID=I6ZSR6_MEDSA	SoyBase	E_val: 4.00E-26	ISS

Expression Patterns of Glyma01g06902

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g06902 not represented in the dataset	Glyma01g06902 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g06902 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g057000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06902

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g06902

Limit To All Plant Sequences

>Glyma01g06902.1   sequence type=CDS   gene model=Glyma01g06902   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTAGCTAGCTTGTCATCAATAGTGCATTCTCCTGGGCGATGCACAATCCTACATCTATCACAGGTTAGGAATAGAGGATTTGAAATTACTTCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTATAGTCTTGGTTAGAGGAGGGAGGGTTAAAGATTTACCCGATGTGAGAGATCATATTGTTCGAGGAACCCTAGATGTTGTCGGAGTAAAGGATCGTCAACAAAGATAA

Predicted protein sequences of Glyma01g06902

Limit To All Plant Sequences

>Glyma01g06902.1   sequence type=predicted peptide   gene model=Glyma01g06902   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVASLSSIVHSPGRCTILHLSQVRNRGFEITSYIPGIGHNLQEHSIVLVRGGRVKDLPDVRDHIVRGTLDVVGVKDRQQR*

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