Glyma01g06750 - SoyBase

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Report for Sequence Feature Glyma01g06750

Feature Type:	gene_model
Chromosome:	Gm01
Start:	7149380
stop:	7152784
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03430	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr2:1036192-1037536 REVERSE LENGTH=240	SoyBase	E_val: 1.00E-121	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0006259	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA metabolic process	SoyBase	N/A	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0007140	GO-bp	Annotation by Michelle Graham. GO Biological Process: male meiosis	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0016444	GO-bp	Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0032504	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24199	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24199:SF294	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G7JXW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JXW1_MEDTR	SoyBase	E_val: 1.00E-130	ISS
UniRef100_I1J5X4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J5X4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g06750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g06750 not represented in the dataset	Glyma01g06750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g06750

Paralog	Evidence	Comments
Glyma02g12690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g06750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g055500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g06750

Limit To All Plant Sequences

>Glyma01g06750.2   sequence type=transcript   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTAAAAGTAACCTAGTTTGAGAAATTTGCCTACTTTAAACTTACAGTAGAATACCGACCCGACCGGTGCATTCTAACTAAAATGCATTAAAATCTCCACGTTATTTTCTAAAGTCTGATGTATTTGCAGCAAAGTTTGTCTCCAACAAGAGAAACGAGAAATCTTACATTTGATTTTCAGGGTGAAAAAAAAAATCAGGGAGAGAAGAAAACGATGGAGATGGAAGTAGACACCGAGAAGAAGCAACAAGACGTGGTGAAAGAGAAGGACTTATTCAAAGCCGCTGAAGAGGGTGACATGTCAACGTTCGAAGCACACTCCTCTGAAACCCTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGCTCCCTCCTCCACGTTGCAGCTTCTTCCGGCCACTCCCAGGTAGTGAAGATGCTATTGTCTTGTGATGCGTCTGTTGGTGTGGTGAATTGTGCCGACGAGGAAGGGTGGGCGCCGCTTCACTCTGCAGCCAGCATTGGGAGTGTGGAGATAGTGGAGACTCTATTGAGCAAAGGAGCTGATGTTAACCTGAAAAATAATGGGGGCCGCACTGCTCTACACTATGCTGCCAGCAAAGGTTGGGTGAAGATCGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGGTTGCACTCCATTGCATCGGGCAGCTAGCACTGGGAAATCTGAGCTGTGTGAATTTTTGATTGAAGAAGGAGCAGAGGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAATGCTGTGATTTGCTATAACAAAGAGGTATGCTTATTTTATGTTTGTGCACACGTGTGTATGCTGTAAAAGAGCAAAAGTACACCAGGCTCAATGTTTTTGTTTGTAAAATTCCTGTCCGCCTGTGTATTAAAATAGTGGATGTGACTTCTTGATTCATTTGTTCATTTTCTTTTGATCCAATCCAATTGCTTAATTAGTTTCTTTACATGCGAATTTTTCAAGAAGGGTGCTATGTTGATTGTTTACAACTGAATCATGCAAGTATATTTTTCTGTACTTGGTGTTCTTTTAACAAATATTTCATCCTTCTCATCTCAAATTAAGATTATGCTTGGTCCTTGCTTGTAAGGCCTGGTCAACAACAATGAAGCATTGAATGACAG

>Glyma01g06750.3   sequence type=transcript   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTAAAAGTAACCTAGTTTGAGAAATTTGCCTACTTTAAACTTACAGTAGAATACCGACCCGACCGGTGCATTCTAACTAAAATGCATTAAAATCTCCACGTTATTTTCTAAAGTCTGATGTATTTGCAGCAAAGTTTGTCTCCAACAAGAGAAACGAGAAATCTTACATTTGATTTTCAGGGTGAAAAAAAAAATCAGGGAGAGAAGAAAACGATGGAGATGGAAGTAGACACCGAGAAGAAGCAACAAGACGTGGTGAAAGAGAAGGACTTATTCAAAGCCGCTGAAGAGGGTGACATGTCAACGTTCGAAGCACACTCCTCTGAAACCCTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGCTCCCTCCTCCACGTTGCAGCTTCTTCCGGCCACTCCCAGGTAGTGAAGATGCTATTGTCTTGTGATGCGTCTGTTGGTGTGGTGAATTGTGCCGACGAGGAAGGGTGGGCGCCGCTTCACTCTGCAGCCAGCATTGGGAGTGTGGAGATAGTGGAGACTCTATTGAGCAAAGGTTGGGTGAAGATCGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGTAGAATGGAAACATTTGATATGTTTGTAACACTGCAGTTTCAATGTACCCCTTTTCTTCAGATCACATTGTTGAAGATAACATGTATTATAATTTAGTGCATGTCTTGTTACTCTTGTACTATGATCAGGTTGGTTGCACTCCATTGCATCGGGCAGCTAGCACTGGGAAATCTGAGCTGTGTGAATTTTTGATTGAAGAAGGAGCAGAGGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAATGCTGTGATTTGCTATAACAAAGAGGTAGCCCTTCTTCTGATAAGACATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACAGTGCTTGGTCGAGCCACACATGAGTTTAGACCAATATTAATTGATGCTGCCAAGGCCATGCTTGAGTGATCATACAACTATAAGAAAATGAGAAAATTGTCAGGACAGGAATGTAAAAAGAGAGCAGAATTGTGGTAGTTATTTCGCAATGCATTAATCGTGGTTACGTTCTTGACAAATTTTCTTGCACAGGCAAAAAGCTCATCTTTACCGTTATGTTCTTAGTTGTCAAACCAGTTTGTTTTGGGTATTTTTGTGCCAGCTTTTAAATCAGAAAGATATTGAATTTTTGTTTTGATAATCTCCTAAATTAGCAATTCAGATTGTATAAATCAAAACATTTTAATTCTAGGGATTTTAAGAATTCTCCGTTAGTTGATTTTACAAG

Coding sequences of Glyma01g06750

Limit To All Plant Sequences

>Glyma01g06750.1   sequence type=CDS   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTGCAGCAAAGTTTGTCTCCAACAAGAGAAACGAGAAATCTTACATTTGATTTTCAGGGTGAAAAAAAAAATCAGGGAGAGAAGAAAACGATGGAGATGGAAGTAGACACCGAGAAGAAGCAACAAGACGTGGTGAAAGAGAAGGACTTATTCAAAGCCGCTGAAGAGGGTGACATGTCAACGTTCGAAGCACACTCCTCTGAAACCCTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGCTCCCTCCTCCACGTTGCAGCTTCTTCCGGCCACTCCCAGGTAGTGAAGATGCTATTGTCTTGTGATGCGTCTGTTGGTGTGGTGAATTGTGCCGACGAGGAAGGGTGGGCGCCGCTTCACTCTGCAGCCAGCATTGGGAGTGTGGAGATAGTGGAGACTCTATTGAGCAAAGGAGCTGATGTTAACCTGAAAAATAATGGGGGCCGCACTGCTCTACACTATGCTGCCAGCAAAGGTTGGGTGAAGATCGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGGTTGCACTCCATTGCATCGGGCAGCTAGCACTGGGAAATCTGAGCTGTGTGAATTTTTGATTGAAGAAGGAGCAGAGGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAATGCTGTGATTTGCTATAACAAAGAGGTAGCCCTTCTTCTGATAAGACATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACAGTGCTTGGTCGAGCCACACATGAGTTTAGACCAATATTAATTGATGCTGCCAAGGCCATGCTTGAGTGA

>Glyma01g06750.2   sequence type=CDS   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTGCAGCAAAGTTTGTCTCCAACAAGAGAAACGAGAAATCTTACATTTGATTTTCAGGGTGAAAAAAAAAATCAGGGAGAGAAGAAAACGATGGAGATGGAAGTAGACACCGAGAAGAAGCAACAAGACGTGGTGAAAGAGAAGGACTTATTCAAAGCCGCTGAAGAGGGTGACATGTCAACGTTCGAAGCACACTCCTCTGAAACCCTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGCTCCCTCCTCCACGTTGCAGCTTCTTCCGGCCACTCCCAGGTAGTGAAGATGCTATTGTCTTGTGATGCGTCTGTTGGTGTGGTGAATTGTGCCGACGAGGAAGGGTGGGCGCCGCTTCACTCTGCAGCCAGCATTGGGAGTGTGGAGATAGTGGAGACTCTATTGAGCAAAGGAGCTGATGTTAACCTGAAAAATAATGGGGGCCGCACTGCTCTACACTATGCTGCCAGCAAAGGTTGGGTGAAGATCGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGGTTGCACTCCATTGCATCGGGCAGCTAGCACTGGGAAATCTGAGCTGTGTGAATTTTTGATTGAAGAAGGAGCAGAGGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAATGCTGTGATTTGCTATAACAAAGAGGTATGCTTATTTTATGTTTGTGCACACGTGTGTATGCTGTAA

>Glyma01g06750.3   sequence type=CDS   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTGCAGCAAAGTTTGTCTCCAACAAGAGAAACGAGAAATCTTACATTTGATTTTCAGGGTGAAAAAAAAAATCAGGGAGAGAAGAAAACGATGGAGATGGAAGTAGACACCGAGAAGAAGCAACAAGACGTGGTGAAAGAGAAGGACTTATTCAAAGCCGCTGAAGAGGGTGACATGTCAACGTTCGAAGCACACTCCTCTGAAACCCTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGCTCCCTCCTCCACGTTGCAGCTTCTTCCGGCCACTCCCAGGTAGTGAAGATGCTATTGTCTTGTGATGCGTCTGTTGGTGTGGTGAATTGTGCCGACGAGGAAGGGTGGGCGCCGCTTCACTCTGCAGCCAGCATTGGGAGTGTGGAGATAGTGGAGACTCTATTGAGCAAAGGTTGGGTGAAGATCGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGTAGAATGGAAACATTTGATATGTTTGTAA

Predicted protein sequences of Glyma01g06750

Limit To All Plant Sequences

>Glyma01g06750.1   sequence type=predicted peptide   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLQQSLSPTRETRNLTFDFQGEKKNQGEKKTMEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAASSGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGGRTALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSELCEFLIEEGAEVDAVDRAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRATHEFRPILIDAAKAMLE*

>Glyma01g06750.2   sequence type=predicted peptide   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLQQSLSPTRETRNLTFDFQGEKKNQGEKKTMEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAASSGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGGRTALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSELCEFLIEEGAEVDAVDRAGQTPLMNAVICYNKEVCLFYVCAHVCML*

>Glyma01g06750.3   sequence type=predicted peptide   gene model=Glyma01g06750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLQQSLSPTRETRNLTFDFQGEKKNQGEKKTMEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAASSGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGWVKIAEMLISHDAKINIKDKVVEWKHLICL*

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