SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03390 | AT | Annotation by Michelle Graham. TAIR10: uvrB/uvrC motif-containing protein | chr2:1030635-1032354 REVERSE LENGTH=330 | SoyBase | E_val: 8.00E-119 | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| PF02151 | PFAM | UvrB/uvrC motif | JGI | ISS | |
| PF08755 | PFAM | Hemimethylated DNA-binding protein YccV like | JGI | ISS | |
| UniRef100_G7JXU8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box only protein n=1 Tax=Medicago truncatula RepID=G7JXU8_MEDTR | SoyBase | E_val: 3.00E-132 | ISS |
| UniRef100_UPI0002337AE4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337AE4 related cluster n=1 Tax=unknown RepID=UPI0002337AE4 | SoyBase | E_val: 0 | ISS |
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Glyma01g06700 not represented in the dataset |
Glyma01g06700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g12650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g055000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g06700.3 sequence type=transcript gene model=Glyma01g06700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATAGTGTGAGGCCATCGACGCAGTTTGAAACCATCTGGTCCTACTCGTTTTTCTGTTCTGCACTTTAGTAATGTTTTTCTGTTTATTTCCCGGGAAATTTTTACTGAATACTTTCCTCATAGTTTATTGCATTCAAATTTCAAAGCTTATCTTTGATTTTCTGAAAAGCAAAACGATACCCACATGTTGTTTCCGGCTTCCATTTCTAGTCCTAATTTTCCTCGCTATACCCAGATAAGAAATGGTTCAGTCGAAGTCCAATTTGACCAAAATTTTGCTAATTTTGAGGGAAAAATGAAATCCGTACTTTCATTTTTTAGTGGGGAACACTCTCTTGAGAAAAAGGGTGAATTTGTGTTTCTGTTTTACCCCATTGAGTGAGGAATAATTTTTTGGCTTTCCCTCAAAAGAACGGTGCAAGTTGTGTCATTGAGCACTCTGGCAACCTGTGGAAAGAGCAGGTTATGTGGATCCTCACCATCTTGGATGGCACCCTTTGAGCCATTCAAGAGATCCCAAATTACCTCTTCCACTGGCAGAAACTTGGTTTGGAACAATTCTGTTCAGAGCTTGTTCTTAACAAGGCACAGTGGTTTCAGGGCTGAAGCAGCATGGATGTTTAGAGGGGGAGAACAAGGGTTGGATGTGAGTTCGGAGCACAGCGAGAGTGCTAATGAGGATATCTTGATGTTCTTCTTCTTTCAGTTGGACTTGGCCACAAGAGTACAGTATGCTTTAAATATGGAGCAGTATGACATTGCAAAGCAGCTGAGGAACAAACTTGCTGAGGTTGAAGAAGAGGTAATCAAGCAACAACAGTCAAAAAGGGGATTGTCTTCAAAAAGTGAAGCACAAGATAAAGCTATAAGTATTATACGTCTTCATTCAGACCTCCAGAATGCTATTGAGAATGAGCATTATGCCTTGGCTGCTGAATTACGTGATGAAATTTCCAAACTTGAAGCAGAGTCTCTAGCTGCATCGGCTAAAGCTTTGGCTCATGAAAATGCACAATATGCATTCCGCTTGGGGCAGAAAGTGAGACATAAAAAATTTGGCTATAAAGCTGTCATCTGTGGAATGGATCCAGTATGCAGTGAATCAAGTTCATGGATGGAAAATGCACAAGTTAAAAAATTGTCTCGTGGTTCCGCTCAACCATTTTATCAGGTTCTTGTTGATGTACATGCTGAACCAAATCTATTGGTGGCATATGGGAAGATTCGATCATCCCTACATCTCTTTTCTATTCTATGGAATGGATTCAGCAGGAGATTTCATCCCAATTAAGCAACTAAGGGAGAAGTACAATAAACCAAGGCATGAAATACCCATTGACCCACCAAATGATGAATGAAGACGGAGGCAAAGCTTAAATTACCAGTGAGACTATATACTGTTCAATTTGGTTGGGGATTGAGAGGTTGAAAGTCTTCTGACGATATATTTGATGAATCAGTTGATCGGCTTTGCAGGAAAACTTAAAGACAAGAAAACATTCCTTGTGTTGCATGCGCAATGATGATTGCCTTCTTGTGTGATCACTCGCATATTCACATGTTATAGTCTGTTGTATGAGTTTTCATATTCCATGCCTTTATCATTGTCGTGAAGATACTGATTACCCACCTAACCCTACCTCATATACATGTAATATAGTGTTGTTCAGAAAAAAATTAGCTCCTGAAATGGGAGAATTTGTCTTTATAATCGAGCATATTTTACTATAATCCCAGCCTTTCAAAGTTGTGATGATGATCATCTCAATGCGATACTAGAATCTCAAGACCTTACTTATACTAGAATCTCATGCTTCTAATCTAGGCTTAAGTCTCATACTTTGTAAAATGAAACTAAGAACTGAGTGTTAGTTATTATTGTGTGTTCTAAAGAAAT
>Glyma01g06700.2 sequence type=CDS gene model=Glyma01g06700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCCTTTGAGCCATTCAAGAGATCCCAAATTACCTCTTCCACTGGCAGAAACTTGGTTTGGAACAATTCTGTTCAGAGCTTGTTCTTAACAAGGCACAGTGGTTTCAGGGCTGAAGCAGCATGGATGTTTAGAGGGGGAGAACAAGGGTTGGATGTGAGTTCGGAGCACAGCGAGAGTGCTAATGAGGATATCTTGATGTTCTTCTTCTTTCAGTTGGACTTGGCCACAAGAGTACAGTATGCTTTAAATATGGAGCAGTATGACATTGCAAAGCAGCTGAGGAACAAACTTGCTGAGGTTGAAGAAGAGGTAATCAAGCAACAACAGTCAAAAAGGGGATTGTCTTCAAAAAGTGAAGCACAAGATAAAGCTATAAGTATTATACGTCTTCATTCAGACCTCCAGAATGCTATTGAGAATGAGCATTATGCCTTGGCTGCTGAATTACGTGATGAAATTTCCAAACTTGAAGCAGAGTCTCTAGCTGCATCGGCTAAAGCTTTGGCTCATGAAAATGCACAATATGCATTCCGCTTGGGGCAGAAAGTGAGACATAAAAAATTTGGCTATAAAGCTGTCATCTGTGGAATGGATCCAGTATGCAGTGAATCAAGTTCATGGATGGAAAATGCACAAGTTAAAAAATTGTCTCGTGGTTCCGCTCAACCATTTTATCAGGTTCTTGTTGATGTACATGCTGAACCAAATCTATTGGTGGCATATGTTCCAGAGGAGAATCTTTTAACACCTGATAAACCAGACATGGAAGATTCGATCATCCCTACATCTCTTTTCTATTCTATGGAATGGATTCAGCAGGAGATTTCATCCCAATTAAGCAACTAA >Glyma01g06700.3 sequence type=CDS gene model=Glyma01g06700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCCTTTGAGCCATTCAAGAGATCCCAAATTACCTCTTCCACTGGCAGAAACTTGGTTTGGAACAATTCTGTTCAGAGCTTGTTCTTAACAAGGCACAGTGGTTTCAGGGCTGAAGCAGCATGGATGTTTAGAGGGGGAGAACAAGGGTTGGATGTGAGTTCGGAGCACAGCGAGAGTGCTAATGAGGATATCTTGATGTTCTTCTTCTTTCAGTTGGACTTGGCCACAAGAGTACAGTATGCTTTAAATATGGAGCAGTATGACATTGCAAAGCAGCTGAGGAACAAACTTGCTGAGGTTGAAGAAGAGGTAATCAAGCAACAACAGTCAAAAAGGGGATTGTCTTCAAAAAGTGAAGCACAAGATAAAGCTATAAGTATTATACGTCTTCATTCAGACCTCCAGAATGCTATTGAGAATGAGCATTATGCCTTGGCTGCTGAATTACGTGATGAAATTTCCAAACTTGAAGCAGAGTCTCTAGCTGCATCGGCTAAAGCTTTGGCTCATGAAAATGCACAATATGCATTCCGCTTGGGGCAGAAAGTGAGACATAAAAAATTTGGCTATAAAGCTGTCATCTGTGGAATGGATCCAGTATGCAGTGAATCAAGTTCATGGATGGAAAATGCACAAGTTAAAAAATTGTCTCGTGGTTCCGCTCAACCATTTTATCAGGTTCTTGTTGATGTACATGCTGAACCAAATCTATTGGTGGCATATGGGAAGATTCGATCATCCCTACATCTCTTTTCTATTCTATGGAATGGATTCAGCAGGAGATTTCATCCCAATTAA
>Glyma01g06700.2 sequence type=predicted peptide gene model=Glyma01g06700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPFEPFKRSQITSSTGRNLVWNNSVQSLFLTRHSGFRAEAAWMFRGGEQGLDVSSEHSESANEDILMFFFFQLDLATRVQYALNMEQYDIAKQLRNKLAEVEEEVIKQQQSKRGLSSKSEAQDKAISIIRLHSDLQNAIENEHYALAAELRDEISKLEAESLAASAKALAHENAQYAFRLGQKVRHKKFGYKAVICGMDPVCSESSSWMENAQVKKLSRGSAQPFYQVLVDVHAEPNLLVAYVPEENLLTPDKPDMEDSIIPTSLFYSMEWIQQEISSQLSN* >Glyma01g06700.3 sequence type=predicted peptide gene model=Glyma01g06700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPFEPFKRSQITSSTGRNLVWNNSVQSLFLTRHSGFRAEAAWMFRGGEQGLDVSSEHSESANEDILMFFFFQLDLATRVQYALNMEQYDIAKQLRNKLAEVEEEVIKQQQSKRGLSSKSEAQDKAISIIRLHSDLQNAIENEHYALAAELRDEISKLEAESLAASAKALAHENAQYAFRLGQKVRHKKFGYKAVICGMDPVCSESSSWMENAQVKKLSRGSAQPFYQVLVDVHAEPNLLVAYGKIRSSLHLFSILWNGFSRRFHPN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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