Glyma01g06600 - SoyBase

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Report for Sequence Feature Glyma01g06600

Feature Type:	gene_model
Chromosome:	Gm01
Start:	6945950
stop:	6947844
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13950	AT	Annotation by Michelle Graham. TAIR10: eukaryotic elongation factor 5A-1 \| chr1:4773631-4774668 FORWARD LENGTH=158	SoyBase	E_val: 3.00E-99	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0006452	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational frameshifting	SoyBase	N/A	ISS
GO:0008612	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-lysine modification to hypusine	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0045901	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of translational elongation	SoyBase	N/A	ISS
GO:0045905	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of translational termination	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
GO:0043022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribosome binding	SoyBase	N/A	ISS
KOG3271	KOG	Translation initiation factor 5A (eIF-5A)	JGI		ISS
PTHR11673	Panther	TRANSLATION INITIATION FACTOR 5A-RELATED	JGI		ISS
PF00467	PFAM	KOW motif	JGI		ISS
PF01287	PFAM	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	JGI		ISS
UniRef100_C6SVG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVG2_SOYBN	SoyBase	E_val: 2.00E-112	ISS
UniRef100_C6ZHS3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 5A1 n=1 Tax=Glycine max RepID=C6ZHS3_SOYBN	SoyBase	E_val: 2.00E-111	ISS

Expression Patterns of Glyma01g06600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g06600 not represented in the dataset	Glyma01g06600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g06600

Paralog	Evidence	Comments
Glyma02g12520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g06600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g054000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g06600

Limit To All Plant Sequences

>Glyma01g06600.2   sequence type=transcript   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGAGGAAAAAAAATGTTACAATGTTCTTCTCTAGTAGTGTGTGTCTATAAAAGGAAAACCAGACGCATCACACATTATGATGCGTGTTATTAACCATAACCATGTCAGACGAGGAACACCACTTCGAGTCAAAGGCTGATGCTGGGGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTCCTCATGTTAATCGCATTGACTACCAGCTCATCGACATCTCAGAGGATGGGTTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTACGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTTATGTCTTCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGATATTGGCCCCAAGTAATAGATTTGGAATTGAGATTATATATTGTATTTATTTTTATTTTTCACTTTTATGTGGGTTTGTATACTAAATCAGCCAAAGTTTGTGCCATTCTTACAAGATGTGGTAACACTTGAATGGCTTTATTTGGGAATCCTTGACCTATATTTTATTGTGTTGTGCAACATCTCATTTTTCGTAAATAAATTAAAAAAAATTTTAGTAAAAAAAAA

>Glyma01g06600.3   sequence type=transcript   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGAGGAAAAAAAATGTTACAATGTTCTTCTCTAGTAGTGTGTGTCTATAAAAGGAAAACCAGACGCATCACACATTATGATGCGTGTTATTAACCATAACCATGTCAGACGAGGAACACCACTTCGAGTCAAAGGCTGATGCTGGGGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCCACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGGAATTGACATATTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCTCATGTTAATCGCATTGACTACCAGCTCATCGACATCTCAGAGGATGGGTTTGTAAGATTTCAGTTACACTTGTGTCTCTTATTCATTACACTTTTCTTCTAAGCTACATCTGTGAGATATTGATACCCCAAAGTGATTTGATGTGATATAAATAAGGTTATTTAGGTAAGATAAATGATAATTTGCACCGATGCTTTTGATTGCATGTTTGGATAATTACGTTTTATGTTCAACGGGGTGATTGGTGATAGAATTGATTTTTTTTTTCCAAAAAAAGCTGAATCAAGCAGGCATCAAACGATTAAAGTAGCCAGATAAATAGTTAATGCATCTGTAGTTAATAAATTATATATGATTTAAATTTTATCTTTAACATCCGTGTATAGTTTCTTGGTCTCATTTTTCACTTTCTCTTCTGATATGGTGTGGTTAATATAGTTTGGCAATTGGTCAATAATGTATGTTACCCTTTACTTAAACTTAGGACAGTACGACTTTCTTTAAGGTGAACTAAGGATATTTTTCAATGAATATATTAGGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTACGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTTATGTCTTCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGATATTGGCCCCAAGTAATAGATTTGGAATTGAGATTATATATTGTATTTATTTTTATTTTTCACTTTTATGTGGGTTTGTATACTAAATCAGCCAAAGTTTGTGCCATTCTTACAAGATGTGGTAACACTTGAATGGCTTTATTTGGGAATCCTTGACCTATATTTTATTGTGTTGTGCAACATCTCATTTTTCGTAAATAAATTAAAAAAAATTTTAGTAAAAAAAAA

Coding sequences of Glyma01g06600

Limit To All Plant Sequences

>Glyma01g06600.1   sequence type=CDS   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACGAGGAACACCACTTCGAGTCAAAGGCTGATGCTGGGGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCCACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGGAATTGACATATTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCTCATGTTAATCGCATTGACTACCAGCTCATCGACATCTCAGAGGATGGGTTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTACGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTTATGTCTTCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGATATTGGCCCCAAGTAA

>Glyma01g06600.2   sequence type=CDS   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACGAGGAACACCACTTCGAGTCAAAGGCTGATGCTGGGGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTCCTCATGTTAATCGCATTGACTACCAGCTCATCGACATCTCAGAGGATGGGTTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTACGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTTATGTCTTCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGATATTGGCCCCAAGTAA

>Glyma01g06600.3   sequence type=CDS   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACGAGGAACACCACTTCGAGTCAAAGGCTGATGCTGGGGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCCACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGGAATTGACATATTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCTCATGTTAATCGCATTGACTACCAGCTCATCGACATCTCAGAGGATGGGTTTGTAAGATTTCAGTTACACTTGTGTCTCTTATTCATTACACTTTTCTTCTAA

Predicted protein sequences of Glyma01g06600

Limit To All Plant Sequences

>Glyma01g06600.1   sequence type=predicted peptide   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLTQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK*

>Glyma01g06600.2   sequence type=predicted peptide   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVPHVNRIDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLTQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK*

>Glyma01g06600.3   sequence type=predicted peptide   gene model=Glyma01g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVRFQLHLCLLFITLFF*

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