Glyma01g06550 - SoyBase

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Report for Sequence Feature Glyma01g06550

Feature Type:	gene_model
Chromosome:	Gm01
Start:	6797683
stop:	6802949
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13960	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 4 \| chr1:4776622-4779043 FORWARD LENGTH=514	SoyBase	E_val: 2.00E-150	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7JWM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=18 Tax=rosids RepID=G7JWM9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J5V4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5V4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g06550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g06550

Paralog	Evidence	Comments
Glyma02g12490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g06550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g053800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g06550

Limit To All Plant Sequences

>Glyma01g06550.1   sequence type=CDS   gene model=Glyma01g06550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCGGCGGAGGTGGGGACCGGCCGCCGTGGAAGGAGGCGGCGCCGCCACGACCCACCATCACTCTGCCGCCGCGGTCGGGTTCCATGGAGACCCTTTTCAATGGAGGGTTCAGCCCTGGTCCCATGACTCTGCTTTCTGGCTTTTTGGGTGATGGGGATGATGGAAAGTCCTTCTCTCAGCTCCTCGCCGGAGCTATGGCTTCTCCGGTGGCCGGAGCTGTCGCCGACGGAGTGATGGACTCACCTAGTCTCTTTTCACCTTCTCAGGTGTCTTTTGGAATGACACACCAGCAGGCCCTAACACAGGTCTCAGCTCAGGCTTCACAAGCCAACTCAAATATGCATATCCAGGCTGAACATTCATTGACACAGGCTTCTGCAGCTACTTTCAATACAACACAACAGCTGATTCCACCCTTAAATGCAGACTCTTGGGCCACAATGACTGAATCAGCAGATCATTCTCATTCTGAACAAAGATTGCAATCTTCATTGTTGAATGTTGATAAGCCGGCAGATGATGGCTACAACTGGAGGAAGTATGGACAGAAACAGGTGAAGGGTAGTGAGTTTCCTCGAAGTTATTACAAGTGCACGCATCCAAACTGTTCTGTCAAGAAAAAGGTCGAGCGCTCACTTGAGGGTCATGTAACTGCAATTATTTATAAAGGAGAACACAACCATCAACGTCCTCATCCTAACAAGCGCTCAAAAGACACCATGACTTCAAATGCAAATTCAAATATCCAAGGGAGTGTAGATTCAACTTATCAAGGGACAACTACGAACTCGATGTCTAAGATGGATCCAGAGTCAAGTCAGGCAACAGCTGATCATCTATCAGGAACAAGTGAAAGCGAGGAAGTAGGCGATCATGAAACCGAAGTGGATGAGAAAAATGTTGAGCCTGACCCCAAGAGGAGAAAAGCAGAAGTCTCGCAGTCAGATCCAGCTTCTTCACATAGGACTGTCACTGAGCCTCGAATCATTGTGCAAACAACAAGTGAAGTTGATCTCTTGGATGATGGGTATAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGCAACCCTTATCCTAGGAGCTATTACAAATGTACAACCCAAGGTTGCAATGTGCGGAAGCACGTGGAGAGGGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACACAATCATGATGTGCCAGCAGCTAAGAATAACAGCCACACTATGGCCAGCAATACTGCATCACAGTTAAAATCGCATAATACCAATCCTGAGAAGCATAATTTTGGCAGCAGAGGTATGGGAGGAAATGAACAACAGCCGGTTGCACGGCTTCGGTTGAAGGAAGAGCAGATCACCTAG

Predicted protein sequences of Glyma01g06550

Limit To All Plant Sequences

>Glyma01g06550.1   sequence type=predicted peptide   gene model=Glyma01g06550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGGGGDRPPWKEAAPPRPTITLPPRSGSMETLFNGGFSPGPMTLLSGFLGDGDDGKSFSQLLAGAMASPVAGAVADGVMDSPSLFSPSQVSFGMTHQQALTQVSAQASQANSNMHIQAEHSLTQASAATFNTTQQLIPPLNADSWATMTESADHSHSEQRLQSSLLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCSVKKKVERSLEGHVTAIIYKGEHNHQRPHPNKRSKDTMTSNANSNIQGSVDSTYQGTTTNSMSKMDPESSQATADHLSGTSESEEVGDHETEVDEKNVEPDPKRRKAEVSQSDPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKNNSHTMASNTASQLKSHNTNPEKHNFGSRGMGGNEQQPVARLRLKEEQIT*

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