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Report for Sequence Feature Glyma01g06540

Feature Type:gene_model
Chromosome:Gm01
Start:6785071
stop:6791180
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32175AT Annotation by Michelle Graham. TAIR10: PNAS-3 related | chr4:15535555-15537537 FORWARD LENGTH=241 SoyBaseE_val: 7.00E-128ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
KOG1004 KOG Exosomal 3'-5' exoribonuclease complex subunit Rrp40 JGI ISS
PTHR21321Panther PNAS-3 RELATED JGI ISS
PTHR21321:SF1Panther PNAS-3 RELATED JGI ISS
UniRef100_B7FLI0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP40 n=1 Tax=Medicago truncatula RepID=B7FLI0_MEDTR SoyBaseE_val: 6.00E-150ISS
UniRef100_I1J5V3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5V3_SOYBN SoyBaseE_val: 3.00E-177ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g06540 not represented in the dataset

Glyma01g06540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g12480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g053700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g06540.3   sequence type=transcript   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACCCATGGTAGATGATGGACATGGTATACATTGGTGAAGGGGCATGAGGTGGATGAATGATGGTGGAACAATGCATATGCCTTGAATTTTAAGCTGACATATACAAGTATGTTTTCACATATACAAATGGTGACATAGCTGTTTTGCCATTCTTTTTAGTGAAATCCTTACGAAACAGACCCTCCATAATATATTTAAAGAGGAACTCCTTTTGATAAAAAGTTTGTAAATAAAATCCATTGACGTCATTTTGCCAATAAATTTAATGAGAAGAAAGGGAAGTGAACTTAGCAAGGAGACCTATCGTCGCACTTTCATTACCATACACACTCACTCTCTCGTCTCTGACCCTTCGCTCAAACACTCAAACCTAACCTAACCTCTCAACAAGACAACTTACCTCATTCAGCCCTTTTTTCTCAAGGTTTCGGAGAGGGATAGCTTTGATCGGTATCACTGTGTTGTTGTGACCGAACTGTTATGCTCTCTTTTGGACCTTTGGTGTTGTCATTGAAAGAATTTTGTAGCTGAGAGGTATAGACATTTAACAGTTACAAATAAGAGTTGTTGAAGGGCTATTTATTCTGGGTCCTTTTTGTGTTCAATAAATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGATCCTTCCATTTTTGATTGGCCATTCATATAGTCCCTTGTGATTTCAATTTCATAGCAGAATACTTGTTTTGCAATTGTCATCTTATGCCATTTCCAATTTATAAAGTGCGTACTTTTTATGTGCTACCAAATACCAATGCTTCTGCAGGGTGAGCACTCTCCACTAGACTAGCCCCACTAGCTAAAGGGCACAAAGGATTATCAACACCTTCATGTTTAATGTGACTTACATGATATTTATAAGAATTGAGAAGTTCTCTTACTATTTACTAGGAGTTTACTTTTCTGGTTACATTATTCTGTGTCTGCAAAATTCAACAACAAAGCCTACTAGGTTACATGAGTTGTACGATGTCATTGGTTTCCGCAAAATATATGAATAGAAAGCCAGTCCTAAGCTTTGTTATTTATATTGTTCATATTTAGAAATCTACTACCTGCAATATTTGTCTAAATCATAAGAAATTATACTCTATTCTGTTAGGGAATCTGTTCTGGCCTGCCTTTAAGAACTATTTGTCAGATTCGGTAAATGTGAAGTGATGAA

>Glyma01g06540.4   sequence type=transcript   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACCCATGGTAGATGATGGACATGGTATACATTGGTGAAGGGGCATGAGGTGGATGAATGATGGTGGAACAATGCATATGCCTTGAATTTTAAGCTGACATATACAAGTATGTTTTCACATATACAAATGGTGACATAGCTGTTTTGCCATTCTTTTTAGTGAAATCCTTACGAAACAGACCCTCCATAATATATTTAAAGAGGAACTCCTTTTGATAAAAAGTTTGTAAATAAAATCCATTGACGTCATTTTGCCAATAAATTTAATGAGAAGAAAGGGAAGTGAACTTAGCAAGGAGACCTATCGTCGCACTTTCATTACCATACACACTCACTCTCTCGTCTCTGACCCTTCGCTCAAACACTCAAACCTAACCTAACCTCTCAACAAGACAACTTACCTCATTCAGCCCTTGTGTTGTTGTGACCGAACTGTTATGCTCTCTTTTGGACCTTTGGTGTTGTCATTGAAAGAATTTTGTAGCTGAGAGGTATAGACATTTAACAGTTACAAATAAGAGTTGTTGAAGGGCTATTTATTCTGGGTCCTTTTTGTGTTCAATAAATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGATCCTTCCATTTTTGATTGGCCATTCATATAGTCCCTTGTGATTTCAATTTCATAGCAGAATACTTGTTTTGCAATTGTCATCTTATGCCATTTCCAATTTATAAAGTGCGTACTTTTTATGTGCTACCAAATACCAATGCTTCTGCAGGGTGAGCACTCTCCACTAGACTAGCCCCACTAGCTAAAGGGCACAAAGGATTATCAACACCTTCATGTTTAATGTGACTTACATGATATTTATAAGAATTGAGAAGTTCTCTTACTATTTACTAGGAGTTTACTTTTCTGGTTACATTATTCTGTGTCTGCAAAATTCAACAACAAAGCCTACTAGGTTACATGAGTTGTACGATGTCATTGGTTTCCGCAAAATATATGAATAGAAAGCCAGTCCTAAGCTTTGTTATTTATATTGTTCATATTTAGAAATCTACTACCTGCAATATTTGTCTAAATCATAAGAAATTATACTCTATTCTGTTAGGGAATCTGTTCTGGCCTGCCTTTAAGAACTATTTGTCAGATTCGGTAAATGTGAAGTGATGAA

>Glyma01g06540.2   sequence type=CDS   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGA

>Glyma01g06540.3   sequence type=CDS   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGA

>Glyma01g06540.4   sequence type=CDS   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGA

>Glyma01g06540.2   sequence type=predicted peptide   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKSTSSFTNLVDQSVCPGDVVLDLSKMINQTIKLGGGLRQDCDAISVMKAGRLRFSKPHKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPRFEIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGALKDGYMFECTTGQSRMLLSSPTCPVLDALGKKLSFEIAVGLNGRVWVDAASPHTTIVVANAIMNSETLSGAQQRIMVEKLLQRIQ*

>Glyma01g06540.3   sequence type=predicted peptide   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKSTSSFTNLVDQSVCPGDVVLDLSKMINQTIKLGGGLRQDCDAISVMKAGRLRFSKPHKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPRFEIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGALKDGYMFECTTGQSRMLLSSPTCPVLDALGKKLSFEIAVGLNGRVWVDAASPHTTIVVANAIMNSETLSGAQQRIMVEKLLQRIQ*

>Glyma01g06540.4   sequence type=predicted peptide   gene model=Glyma01g06540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKSTSSFTNLVDQSVCPGDVVLDLSKMINQTIKLGGGLRQDCDAISVMKAGRLRFSKPHKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPRFEIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGALKDGYMFECTTGQSRMLLSSPTCPVLDALGKKLSFEIAVGLNGRVWVDAASPHTTIVVANAIMNSETLSGAQQRIMVEKLLQRIQ*







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