Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g06540): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g06540): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma01g06540
Feature Type: gene_model
Chromosome: Gm01
Start: 6785071
stop: 6791180
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g06540
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32175 AT
Annotation by Michelle Graham. TAIR10: PNAS-3 related | chr4:15535555-15537537 FORWARD LENGTH=241
SoyBase E_val: 7.00E-128 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
KOG1004
KOG
Exosomal 3'-5' exoribonuclease complex subunit Rrp40
JGI ISS
PTHR21321 Panther
PNAS-3 RELATED
JGI ISS
PTHR21321:SF1 Panther
PNAS-3 RELATED
JGI ISS
UniRef100_B7FLI0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP40 n=1 Tax=Medicago truncatula RepID=B7FLI0_MEDTR
SoyBase E_val: 6.00E-150 ISS
UniRef100_I1J5V3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5V3_SOYBN
SoyBase E_val: 3.00E-177 ISS
Expression Patterns of Glyma01g06540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g06540
Paralog Evidence Comments
Glyma02g12480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g06540 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g053700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g06540
Transcripts of Glyma01g06540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g06540.3 sequence type=transcript gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAAACCCATGGTAGATGATGGACATGGTATACATTGGTGAAGGGGCATGAGGTGGATGAATGATGGTGGAACAATGCATATGCCTTGAATTTTAAGCTGACATATACAAGTATGTTTTCACATATACAAATGGTGACATAGCTGTTTTGCCATTCTTTTTAGTGAAATCCTTACGAAACAGACCCTCCATAATATATTTAAAGAGGAACTCCTTTTGATAAAAAGTTTGTAAATAAAATCCATTGACGTCATTTTGCCAATAAATTTAATGAGAAGAAAGGGAAGTGAACTTAGCAAGGAGACCTATCGTCGCACTTTCATTACCATACACACTCACTCTCTCGTCTCTGACCCTTCGCTCAAACACTCAAACCTAACCTAACCTCTCAACAAGACAACTTACCTCATTCAGCCCTTTTTTCTCAAGGTTTCGGAGAGGGATAGCTTTGATCGGTATCACTGTGTTGTTGTGACCGAACTGTTATGCTCTCTTTTGGACCTTTGGTGTTGTCATTGAAAGAATTTTGTAGCTGAGAGGTATAGACATTTAACAGTTACAAATAAGAGTTGTTGAAGGGCTATTTATTCTGGGTCCTTTTTGTGTTCAATAAATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGATCCTTCCATTTTTGATTGGCCATTCATATAGTCCCTTGTGATTTCAATTTCATAGCAGAATACTTGTTTTGCAATTGTCATCTTATGCCATTTCCAATTTATAAAGTGCGTACTTTTTATGTGCTACCAAATACCAATGCTTCTGCAGGGTGAGCACTCTCCACTAGACTAGCCCCACTAGCTAAAGGGCACAAAGGATTATCAACACCTTCATGTTTAATGTGACTTACATGATATTTATAAGAATTGAGAAGTTCTCTTACTATTTACTAGGAGTTTACTTTTCTGGTTACATTATTCTGTGTCTGCAAAATTCAACAACAAAGCCTACTAGGTTACATGAGTTGTACGATGTCATTGGTTTCCGCAAAATATATGAATAGAAAGCCAGTCCTAAGCTTTGTTATTTATATTGTTCATATTTAGAAATCTACTACCTGCAATATTTGTCTAAATCATAAGAAATTATACTCTATTCTGTTAGGGAATCTGTTCTGGCCTGCCTTTAAGAACTATTTGTCAGATTCGGTAAATGTGAAGTGATGAA
>Glyma01g06540.4 sequence type=transcript gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAAACCCATGGTAGATGATGGACATGGTATACATTGGTGAAGGGGCATGAGGTGGATGAATGATGGTGGAACAATGCATATGCCTTGAATTTTAAGCTGACATATACAAGTATGTTTTCACATATACAAATGGTGACATAGCTGTTTTGCCATTCTTTTTAGTGAAATCCTTACGAAACAGACCCTCCATAATATATTTAAAGAGGAACTCCTTTTGATAAAAAGTTTGTAAATAAAATCCATTGACGTCATTTTGCCAATAAATTTAATGAGAAGAAAGGGAAGTGAACTTAGCAAGGAGACCTATCGTCGCACTTTCATTACCATACACACTCACTCTCTCGTCTCTGACCCTTCGCTCAAACACTCAAACCTAACCTAACCTCTCAACAAGACAACTTACCTCATTCAGCCCTTGTGTTGTTGTGACCGAACTGTTATGCTCTCTTTTGGACCTTTGGTGTTGTCATTGAAAGAATTTTGTAGCTGAGAGGTATAGACATTTAACAGTTACAAATAAGAGTTGTTGAAGGGCTATTTATTCTGGGTCCTTTTTGTGTTCAATAAATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGATCCTTCCATTTTTGATTGGCCATTCATATAGTCCCTTGTGATTTCAATTTCATAGCAGAATACTTGTTTTGCAATTGTCATCTTATGCCATTTCCAATTTATAAAGTGCGTACTTTTTATGTGCTACCAAATACCAATGCTTCTGCAGGGTGAGCACTCTCCACTAGACTAGCCCCACTAGCTAAAGGGCACAAAGGATTATCAACACCTTCATGTTTAATGTGACTTACATGATATTTATAAGAATTGAGAAGTTCTCTTACTATTTACTAGGAGTTTACTTTTCTGGTTACATTATTCTGTGTCTGCAAAATTCAACAACAAAGCCTACTAGGTTACATGAGTTGTACGATGTCATTGGTTTCCGCAAAATATATGAATAGAAAGCCAGTCCTAAGCTTTGTTATTTATATTGTTCATATTTAGAAATCTACTACCTGCAATATTTGTCTAAATCATAAGAAATTATACTCTATTCTGTTAGGGAATCTGTTCTGGCCTGCCTTTAAGAACTATTTGTCAGATTCGGTAAATGTGAAGTGATGAA
Coding sequences of Glyma01g06540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g06540.2 sequence type=CDS gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGA
>Glyma01g06540.3 sequence type=CDS gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGA
>Glyma01g06540.4 sequence type=CDS gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGACAAAATCCACCAGTTCATTTACAAACTTAGTAGACCAATCAGTGTGTCCTGGAGATGTGGTTCTTGATCTTTCTAAAATGATAAACCAGACAATTAAACTTGGAGGCGGTCTACGACAGGATTGTGATGCAATTTCTGTAATGAAGGCTGGCAGACTCAGGTTCTCAAAGCCTCATAAATACTGGGTTGAAAATTCTCAGAAGAGGTATGTGCCATATGCAGAGGATTCTGTTCTTGGAATTGTTGTAGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAACTTTAGCATTTTTACCGGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCTAGGTTTGAGATAGGTACTTTGATTTACGTGCGGGTTATAAAAGCAAACCCTGGAATGAATCCAGAGCTATCGTGCACTGATGCCAGTGGGAAAGCTGCAGAATTTGGTGCCCTAAAAGATGGCTATATGTTTGAGTGTACAACAGGTCAATCAAGGATGCTTCTCAGTTCTCCCACATGTCCAGTACTTGATGCTTTAGGGAAGAAACTGTCCTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCGATGCAGCATCTCCACACACAACTATTGTTGTAGCTAATGCGATTATGAACTCTGAGACATTGAGTGGTGCTCAGCAGAGAATAATGGTTGAAAAGCTGCTGCAGAGGATCCAGTGA
Predicted protein sequences of Glyma01g06540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g06540.2 sequence type=predicted peptide gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
METKSTSSFTNLVDQSVCPGDVVLDLSKMINQTIKLGGGLRQDCDAISVMKAGRLRFSKPHKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPRFEIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGALKDGYMFECTTGQSRMLLSSPTCPVLDALGKKLSFEIAVGLNGRVWVDAASPHTTIVVANAIMNSETLSGAQQRIMVEKLLQRIQ*
>Glyma01g06540.3 sequence type=predicted peptide gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
METKSTSSFTNLVDQSVCPGDVVLDLSKMINQTIKLGGGLRQDCDAISVMKAGRLRFSKPHKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPRFEIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGALKDGYMFECTTGQSRMLLSSPTCPVLDALGKKLSFEIAVGLNGRVWVDAASPHTTIVVANAIMNSETLSGAQQRIMVEKLLQRIQ*
>Glyma01g06540.4 sequence type=predicted peptide gene model=Glyma01g06540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
METKSTSSFTNLVDQSVCPGDVVLDLSKMINQTIKLGGGLRQDCDAISVMKAGRLRFSKPHKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPRFEIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGALKDGYMFECTTGQSRMLLSSPTCPVLDALGKKLSFEIAVGLNGRVWVDAASPHTTIVVANAIMNSETLSGAQQRIMVEKLLQRIQ*