SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03150 | AT | Annotation by Michelle Graham. TAIR10: ATP/GTP-binding protein family | chr2:952313-959004 FORWARD LENGTH=1340 | SoyBase | E_val: 2.00E-118 | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG4246 | KOG | Predicted DNA-binding protein, contains SAP domain | JGI | ISS | |
| PTHR14304 | Panther | P30 DBC PROTEIN | JGI | ISS | |
| PTHR14304:SF2 | Panther | P30 DBC PROTEIN | JGI | ISS | |
| UniRef100_G7JWF9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle and apoptosis regulator protein n=1 Tax=Medicago truncatula RepID=G7JWF9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337315 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337315 related cluster n=1 Tax=unknown RepID=UPI0002337315 | SoyBase | E_val: 0 | ISS |
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Glyma01g06170 not represented in the dataset |
Glyma01g06170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g12230 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g051400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g06170.1 sequence type=CDS gene model=Glyma01g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATTCAAGAGGGAGCGGCGGTTACGGCCAATCGTACACTGGTCAATCCGCATATGGCCAGAACCTGGGTGGCAATTATTCTGGGAGTTCTGTTGGAGGGCATGATGTGGGTCAGCATTCTGTGGCTTCTAGGCATTCAACAATTTTAGGTGGTTCTCAGGACGTTGATGTTGGTGGGTATAGGCCTTCGGCTGCGACCCAGTATGGGGGACAGTATAGTTCTGTTTATGGCTCTGCTGCATTGAGCAGTGCACAGCAGGTCCCTTCATTGAGTACCAAGGGTTCTGCATCATCAGCTTTAGATGGTCGTGGAGGCTATGCTTTGGGTGTCTCTGATTCACCTAAGTTTGCATCTGGAGATTATGTCTCGTCCTCAAGCCATGGATATGGTCACAAATCTGATCAATTGTATGGTGACAAAGGTTTGGAATATTCTGGAATAGATAGGAGACAATATGGTGAACGGCAGAGTGGTTACCTTGGTAGGGACTTAACAAGTGATCCAGCTGGAAGATATGCTGCTGATCCTGTTGGATTTAGTCATCAGCGTCAGCAATCAGAAATTTATGATCGCATTGATCAGGCAGCTTTGCTTCGACAAGAGCAATTGCTGAAAGCTCAGTCTCTGCAAGCTGCATCACTTGATGGGGGTGCTAGACAAGCTGATTATCTTGCAGCAAGGGCTGCTGCTACTCGTCACCCCACCCAAGATCTTGTGTCTTATGGAGGAAGGATGGATTCCGATCCCCGTGCTTCATCCATGCTAAGTGCTACTTCATATAGTGGACAACATGCGCCATCAATATTAGGAGCAGCTCCAAGGAGAAACGTGGATGATCTCTTGTATTCTCAGAATGCTTCAAATCCTGGTTATGGAGTGAGCCTTCCTCCTGGTAGGGACTATGCCAGTGGAAAAGGTCTTCATGGGAATGCCATGGAGTTGGACTATCCTGGAAATGTGCTGCCACATGGTGGGCATACTGATCGCAAAGATGACCGGGCAAGTTATCTACGAGAATTTGAGCTAAGGGAAGAAGAGCGTCGCCGGGAGCGCTTGCGTGAGAGAGAGAGGGACAGAGAAAAAGAGAAAGAACGGGAACGATTGCGAGAGCGAGAACGAGAAAGGGAACGTGAAAGGGATCGCATTATGGAGCGGCGCGAGAAGGAAAGGGAGCGAGAGCGCAAACGTGCACTTGAAACTAAGCCTGAACGAACTCCTGCGAGATCCTCCAAGGATCCCCGTGGTACTTCAAAAGATCCCCGTGGTACTTCAAAAGATCCCCGTGGGTCGTCTTTGACAAAGGAGGGGAGATCTACACGACGGGACTCCCCACATCATGGAGCATTACATAGGCACCATTCACCTGTTAAAGAAAAACGGAGAGAATATGTCTGCAAGATATTCCCATCCCGCTTGGTAGATATTGAGAGGGATTACCTCTTATTAGATAAGCGATACCCCCGACTCTTTGTCTCTCCTGAATTCTCCAAGGCTGTTGTGAACTGGCCAAAGGAAAACCATAAACTGTCTATTCATACTCCTGTCAGTTTTGAGCATGACTTTGTTGAAGAAGAAAGTGCCACTGAGCCTAGAGACTCCTCCAACAAGCTTTTGGTGGGACAACCTCCAAATTCATTACAAGGAAATACAGTTTGGAATGCTAAAATAATCTTGATGAATGGACTTAGTAGGTCTGCGTTGGAGGAGCTGTCATCTGATAAAATTGTAGATGATCGCATTCCTCATTTTTGCAATTTCCTTAGATTTGCGGTTCTTAAGAAGGATCATTCTTTCATGGCAGTTGGTGGTCCATGGGAACCTGTTGATGGGGGTGATCCATCTATTGACAATAACTCTTTAATCAAAACTGCCCTCAGATATGCAAAGGATGTTATTCAACTTGACTTGCAGAATTGTCAACATTGGAATCCTTTTCTTGAGTTACATTATGATAGAATTGGCAAAGATGGTTTCTTTAGCCACAAGGAAATCACTGTTCTTTATGTTCCTGATTTGTCTGACTGCCTCCCTTCGTTGGATGAATGGCGTGACAAGTGGCTTGCCCACAAGAAAGCTGTGGCTGAAAAAGAGCGTCAACTTTCTTTGAAAAAAGAGAAATCAAGAGATAACAAGGAAGTATCTAAAGATAAATCAGATAAAAGGAAGGATTCTACTCCATCAGGAAAGTCAGATGTAAAGAAAAAAGAGAAAGATAATAATACTGTTAAGGAAGAAATTGAAGGAAAGACTGGAGTGAATAACAATAAAATCACTAAAAATGAAGGTTCTGACATGGGTGAAGAAGGCAAGAGTGCTGAGAAAAAGACGGGGGTAACTGTCACTGGTCAAACCACAGGTGGTGTGAAGTCTGTGAAAAAGAAGATTATAAAGAGGGTTGTGAAACAGAAAGTTGCCACTAAGGCAAAGGCTACTGCCATCAAACAAACAGACAAATCAGGTGAAAAGGATGTTGCTGAGAAAGTGACATCCAATGTTACTGATCAGGATGGAAAATCTCCTACTGGGGTTGAAACTCCTGTAAAAAACTTAGTTGCTGAGGATATGTCTATTGGGAAAATTGATAGTGAAGAGGGCAAAGATAAAGAAATAAATAGTTCTGAAGATAAACCTCAAAACAAGCCAAATCCAACAGTAAATGCAGTTGTGAGTGATCCTTCTGTGAAAACAACAAAGAAGAAGAAAATTATTAAGCGGGTACCTAAAAAGAAGGTGGTGGGTGAGGCTTCTAAATCTCTTGTATCTGAACCTAAAAAGGATGAGAATCAAGGACAAGATAGTACCCAGAGCTCTGGAAAGCAGACTGCAGATGCAAATACCATAGTGACCGAGGAGAAGAAACCTGGGAAGGTAGTTCCGAAGAAAAAGATAAAAACACCTGTCTCTAAGAAGAAAGATGAAACTGCTGATTCCAATAAAACAGAAACACTGTCTGACAAAAAGGATGAAGGGAACGTTGTGGCAGTTCAAGCACAAGATGACACACAGAGCACTGGCAAGCAGACTGCCAATGCAGATACCACAGTGACACCAGAGGTGAAGAAAACTGGGAAGGTTGTCCCTAAAAAACAATCAAAGACCCCCACGTCTGAAAAGCGAGACAATACAGCTGATTCCAGTAAAACAGAAACAAAGTCTGACAAAGATGACAAAAAGGAAGAAAGAGTTACTGGTGAAAAAAGTGGGGCAAAGACAGACAAGCTGAAAGCCTCTGATAAAGATGTTACCAATGTAAAGGGGAAAGTGAAAGATGGGGACAAGTCAAAAGATGAGAAAGTAACCCAAGAGAGGGATGGAAAGGACGAGTCCAAAAGCAAATCTAGTAAGGAAGTGAAAGACAAGAGGAAGTCTAATGAACCTCCTCGACACCCTGGATTTATTCTTCAAACAAAATGGACCAAAGATTCTAAAATACGTTCTTTGTCATTGTCACTGGATTCATTGCTGGATTATACAGATAAAGATGTTGAAGAATCAAATCTTGAGCTTTCATTGTTTGCTGAATCATTTTATGAAATGCTTCAGTTTCAAATGGGTTCTAGAATTTTGACATTTCTTCAGAAACTGCGCATAAAATTTGTGATCAAAAGAAATCAGAAAAAGAGGCAGAGGGAAGATGAGCAAGAGAAGGATGATGTAAAAAAATCTCCTGTTAAGCGTCAAAAGGGAAATGATCCTTCAGTGAAGAATGAGCCCACAAATATGGACACGTTAAATCCAACCCTACTAGATGATGAGAAAGCTGTTGCTAGGAATGATAACTCTAGTAATAAGGAGGATGATGTGAAGATGGAAGATGGATCAGACGAGGAAGAAGAAGATCCAGAAGAGGATCCTGAAGAGTACGAGGAAATGGAAAATGGTAGTCCCCAGCATGAGGCATCCAATGATAAAAATGCTGAGCAAGAGGCGAATGCAGATACTAAATCTGAAAATATTACTACCAATGATAAAACAGCAGATGAAACTTCTAAAGAGGAGATTAAGGTTAAAGATGAGGTGCAAGAATCCAAGGCCGATCTACAGGTAAAAGAAGAAAAGGAAGGAAAGGATGAGATTAAGAAAGAAACTCCTACTGCTAAGGAGGTTGTTGTGGACAGAGAATTGTTGCAGGCTTTCCGGTTTTTTGATCGCAATCGTGTTGGGTACATCAGGGTTGAAGATATGAGAATAATTATCCATAATCTGGGGATGTTCTTTTCGCACAGGGATGTCAAGGAACTAGTACAGAGTGCATTATTGGAGAGCAACACTGGGAGAGACGACAGAATTCTTTATAATAAGCTAGTGCGGATGAGTGATATTTGA
>Glyma01g06170.1 sequence type=predicted peptide gene model=Glyma01g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYSRGSGGYGQSYTGQSAYGQNLGGNYSGSSVGGHDVGQHSVASRHSTILGGSQDVDVGGYRPSAATQYGGQYSSVYGSAALSSAQQVPSLSTKGSASSALDGRGGYALGVSDSPKFASGDYVSSSSHGYGHKSDQLYGDKGLEYSGIDRRQYGERQSGYLGRDLTSDPAGRYAADPVGFSHQRQQSEIYDRIDQAALLRQEQLLKAQSLQAASLDGGARQADYLAARAAATRHPTQDLVSYGGRMDSDPRASSMLSATSYSGQHAPSILGAAPRRNVDDLLYSQNASNPGYGVSLPPGRDYASGKGLHGNAMELDYPGNVLPHGGHTDRKDDRASYLREFELREEERRRERLRERERDREKEKERERLRERERERERERDRIMERREKERERERKRALETKPERTPARSSKDPRGTSKDPRGTSKDPRGSSLTKEGRSTRRDSPHHGALHRHHSPVKEKRREYVCKIFPSRLVDIERDYLLLDKRYPRLFVSPEFSKAVVNWPKENHKLSIHTPVSFEHDFVEEESATEPRDSSNKLLVGQPPNSLQGNTVWNAKIILMNGLSRSALEELSSDKIVDDRIPHFCNFLRFAVLKKDHSFMAVGGPWEPVDGGDPSIDNNSLIKTALRYAKDVIQLDLQNCQHWNPFLELHYDRIGKDGFFSHKEITVLYVPDLSDCLPSLDEWRDKWLAHKKAVAEKERQLSLKKEKSRDNKEVSKDKSDKRKDSTPSGKSDVKKKEKDNNTVKEEIEGKTGVNNNKITKNEGSDMGEEGKSAEKKTGVTVTGQTTGGVKSVKKKIIKRVVKQKVATKAKATAIKQTDKSGEKDVAEKVTSNVTDQDGKSPTGVETPVKNLVAEDMSIGKIDSEEGKDKEINSSEDKPQNKPNPTVNAVVSDPSVKTTKKKKIIKRVPKKKVVGEASKSLVSEPKKDENQGQDSTQSSGKQTADANTIVTEEKKPGKVVPKKKIKTPVSKKKDETADSNKTETLSDKKDEGNVVAVQAQDDTQSTGKQTANADTTVTPEVKKTGKVVPKKQSKTPTSEKRDNTADSSKTETKSDKDDKKEERVTGEKSGAKTDKLKASDKDVTNVKGKVKDGDKSKDEKVTQERDGKDESKSKSSKEVKDKRKSNEPPRHPGFILQTKWTKDSKIRSLSLSLDSLLDYTDKDVEESNLELSLFAESFYEMLQFQMGSRILTFLQKLRIKFVIKRNQKKRQREDEQEKDDVKKSPVKRQKGNDPSVKNEPTNMDTLNPTLLDDEKAVARNDNSSNKEDDVKMEDGSDEEEEDPEEDPEEYEEMENGSPQHEASNDKNAEQEANADTKSENITTNDKTADETSKEEIKVKDEVQESKADLQVKEEKEGKDEIKKETPTAKEVVVDRELLQAFRFFDRNRVGYIRVEDMRIIIHNLGMFFSHRDVKELVQSALLESNTGRDDRILYNKLVRMSDI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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