Glyma01g06110 - SoyBase

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Report for Sequence Feature Glyma01g06110

Feature Type:	gene_model
Chromosome:	Gm01
Start:	6014487
stop:	6016913
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14150	AT	Annotation by Michelle Graham. TAIR10: PsbQ-like 2 \| chr1:4839885-4840632 FORWARD LENGTH=190	SoyBase	E_val: 5.00E-64	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009767	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009344	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nitrite reductase complex [NAD(P)H]	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009523	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: oxygen evolving complex	SoyBase	N/A	ISS
GO:0019898	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane	SoyBase	N/A	ISS
GO:0030095	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem II	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0045156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	SoyBase	N/A	ISS
PF05757	PFAM	Oxygen evolving enhancer protein 3 (PsbQ)	JGI		ISS
UniRef100_G7KGQ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxygen-evolving enhancer protein 3-2 n=2 Tax=Medicago truncatula RepID=G7KGQ5_MEDTR	SoyBase	E_val: 1.00E-91	ISS
UniRef100_I1J5T1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5T1_SOYBN	SoyBase	E_val: 1.00E-136	ISS

Expression Patterns of Glyma01g06110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g06110 not represented in the dataset	Glyma01g06110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g06110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g050900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g06110

Limit To All Plant Sequences

>Glyma01g06110.2   sequence type=CDS   gene model=Glyma01g06110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCACATGGCATAATAGTAAGGTCTTCCATACCGGGCAGCACGGTCAGCCAAACTGGTCCTGCCCGAAAACTCAAAGAGTCCAAATTCCCACCTCACCACTCAAGGCTCACTTACTTACCACACACACCTCCTAAACCAAAATTATCCAAAACCATGTCCAGCTTCACTCATGCCACCACACTCCTCCATGCCCACATCAAAACCAAGCACAAAAAACCCTCCACCACCACCACCACCACCACCCCATTACCCCATAACCATTCCCCCAACAGAAGGAAGCTGATTTCAACCTTTCTAGCCACTTCAACAGCAGCACTACTAGTGCATGGAGTCACCAGCACCCCACAAGCACTGGCCCAGAGCTGGGGCACGCACTCCTTCATCAAGGAGCACTTCTTCGAGCCGGGGCTCTCCCCGGAAGACGCGGTGGCGAGGATAAAGCAGACTGCGGAGGGGCTGCACAGCATTCGGGAGGCGCTGGAGACCATGTCTTGGAGGTATATCATGTTCTACATACGCATCAAGCAGGCCTATCTTGACCAGGACTTGAGGACTGCCTTCACCACCTTGCCTGAGAGTAGACGCAAGGAGTATGTCAAAACTGCTAATGAGTTGGTGTCTAACTTTGGTGAGTTTGATAGGCATATTCGGACGCCAAAGGTATATGAATCATACCTATACTACGAGAAGACATTGAAGTCAATAGATCAACTTGTGGCCATACTAGCATAG

Predicted protein sequences of Glyma01g06110

Limit To All Plant Sequences

>Glyma01g06110.2   sequence type=predicted peptide   gene model=Glyma01g06110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPHGIIVRSSIPGSTVSQTGPARKLKESKFPPHHSRLTYLPHTPPKPKLSKTMSSFTHATTLLHAHIKTKHKKPSTTTTTTTPLPHNHSPNRRKLISTFLATSTAALLVHGVTSTPQALAQSWGTHSFIKEHFFEPGLSPEDAVARIKQTAEGLHSIREALETMSWRYIMFYIRIKQAYLDQDLRTAFTTLPESRRKEYVKTANELVSNFGEFDRHIRTPKVYESYLYYEKTLKSIDQLVAILA*

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