Glyma01g06080 - SoyBase

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Report for Sequence Feature Glyma01g06080

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5980780
stop:	5983675
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64130	AT	Annotation by Michelle Graham. TAIR10: cAMP-regulated phosphoprotein 19-related protein \| chr5:25664547-25665339 REVERSE LENGTH=115	SoyBase	E_val: 2.00E-45	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04667	PFAM	cAMP-regulated phosphoprotein/endosulfine conserved region	JGI		ISS
UniRef100_I1J5S9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5S9_SOYBN	SoyBase	E_val: 7.00E-111	ISS
UniRef100_Q93Z49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g64130/MHJ24_11 n=1 Tax=Arabidopsis thaliana RepID=Q93Z49_ARATH	SoyBase	E_val: 1.00E-42	ISS

Expression Patterns of Glyma01g06080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g06080 not represented in the dataset	Glyma01g06080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g06080

Paralog	Evidence	Comments
Glyma02g12170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g06080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g050500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g06080

Limit To All Plant Sequences

>Glyma01g06080.1   sequence type=CDS   gene model=Glyma01g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGATGCTAAGGTTGAGGATTTGAAGAAGGAAGAGGAGGTTGGTGATGATTCTCCTAGGAACGAAGTTGACAGTGAAAAATCTGCGGATGATCTGAAAGATTCGGATAACGATAAAAGCGATGGAAACCCCATGCCCTCATCCCAGCAGGAGGAAGCAGCTGTTAAGAAAAAGTATGGAGGGATGTTACCAAAGAAGCCTCCACTAATATCGAAGGATCATGAACGTGCTTACTTTGACTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGCACAAAAGCCTAAAGGACCACTTGAAGCACTCCGCCCAAAGTTGCAGCCAACACAACAGCACGCTCGTTCAAGACGCTCAGCTTATGCTCCAGCAGATGATAATGAAGTTGATGGCTGCAACAGTGATGCATCAGCAGAGCATCAGAGTGCTACTGAAGAAGTTGGTGGTGATAAAAGTGATACTGCTCAGGACCAAAGCTGCCATTAG

Predicted protein sequences of Glyma01g06080

Limit To All Plant Sequences

>Glyma01g06080.1   sequence type=predicted peptide   gene model=Glyma01g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDAKVEDLKKEEEVGDDSPRNEVDSEKSADDLKDSDNDKSDGNPMPSSQQEEAAVKKKYGGMLPKKPPLISKDHERAYFDSADWALGKQGAQKPKGPLEALRPKLQPTQQHARSRRSAYAPADDNEVDGCNSDASAEHQSATEEVGGDKSDTAQDQSCH*

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