Glyma01g06060 - SoyBase

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Report for Sequence Feature Glyma01g06060

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5950521
stop:	5957354
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14180	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:4847828-4848970 FORWARD LENGTH=348	SoyBase	E_val: 3.00E-66	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0042127	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_B6SVJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mandelonitrile lyase n=1 Tax=Zea mays RepID=B6SVJ2_MAIZE	SoyBase	E_val: 5.00E-76	ISS
UniRef100_UPI0002337312	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337312 related cluster n=1 Tax=unknown RepID=UPI0002337312	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma01g06060

Locus	Gene Symbol	Protein Name
	EXPA31	alpha-expansin gene 31

Expression Patterns of Glyma01g06060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g06060 not represented in the dataset	Glyma01g06060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g06060

Paralog	Evidence	Comments
Glyma02g12150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g06060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g050400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g06060

Limit To All Plant Sequences

>Glyma01g06060.3   sequence type=transcript   gene model=Glyma01g06060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGCAAACGGCGCGTTTAAAGTTCAAACAGTTTATTTAGAAGAAAGAACACTAACAGAAGATGCGGGTGCCAGCTGTTCAACCACTTTGCTTTCTTCTTCCTTAGTTTCGTTTGGTTAGTTAGGGTTTTCCTTTCCACAACTTCACTTTCTTCTTCACTTCTTGCAATCACACAATACAACAACGCAATTCCTCCACAAACTGAAAAAAAAACACACAATTTCGCTCACTACAGAACTCGCACGTGCCCTTACTTTCCTGTCACGTGTGCGGTGGAGTTTAGTCTCCATTAGAGATGTGGGTTGAAGGTGGAAATTATTGAATGTCGAATTATTCAGCTTGAGGAGTTGGAACTTATTTTTGGAAGTATTCATCTTGTGCGTGTCATTACTGAGTTGACTAGTGTCCAAAATAGGTTGGATTGGAGGCATTCAGAATTAGGTTTATTGTGTATTCTGAGAAAATAGCTAAAACGGGGTCGCTTTGTTGTGTGGCTTCAAGGCCACATGAATCAAATGCTGGCAGTAGGGACTGGTCCATGGGTCCAAATGAGCCCTACTGGCGAACAAATTCAAGTTTTTCGCCTCCTCCGACGAGGTGGGATTTCAGATTTCAGTCTGAAGGTCTGTCATATGGTGTGAATGATGGTGTTCAACTCTATGGGTCTTCTACATCGGAAAACGATAAAGAAAGTAGGGGTTGGGTCAGAGGCAACCACCTATATGATCTTCACTATTCTGCTTCAGATGGTACTGGGATTTTCCTTAGCAGTCCATCTGACCTTTCTCAGGGTCCTCAGTGGACGCCTCCTGCAATACAAGAAATCAGTATTGACAATTATGAAACTTCGACTAGGAAAGGGAACATCTGTGAATCACTACTGTGGGGGTTCAACTTCATCTCAATCGGAAAGTAGTGAATCAGAGTCTACTACAAAATCACATTTATCCTCTGAGAGGAATTTCGCTAATCTTCGTTCATTCATGTCTAAGCCTATTCACCCTATGTCCTTTAATGACCTAACAACTACTAGGGATGCCTTTGATCCTGCAGTTACAGATTTTACAGAGTTTGATACTTCCACTCCACTCAGAGATGGCCAGCGTTGGAGTAGTGCCAGCAGTAGTCAGGAGTTTGCTGACGTTACCGAGTCATTTGAATTAGAAACACCTGGTCGCTCACATTTTCTGTCAGATGGATTTAAATGTGGCTTGTGTGAAAGATTTCTCTCACAGCGATCACCTTGGAGCTCCCGTCGTATTGTGAGAAGTGGAGACATGCCTACAATTGGGGTTCTTCCTTGTTGTCATGCTTTTCATGCTGAGTGTTTGGAGCAAGCGACGCCAAAGACCCGGAAAAGTGATCCTCCTTGCCCTGTGTGTGTCAAATTGGAGGAAAATTCCCCTGATCAACGGAGCCATTTGAGATTGAGGACTGGTTTTCCAAGGCTTAAATCATCTCGTGACGATGGACCGTCAAGACCTTGGGGATGTGTACAGGTAGGTGATTGTGTTGAAGGGGCTCTGCATGCACCACCAGGCAACACAATGTTGCTGCTTAATCGAAACCGCATTAAGAACCCTTCTTTGAAAGGAATTTCCAGGTAAAGTGAGGAAAAATGGGATATTTTCTTCACATCTGTTTAGTGGAAGCTCAGCTGATGGGGAAGCAGTTAGTTGCTCTAAGGCAACTGCAGGTCCAAGTGTGTGGAGGTAATAGCCAATGTTGGTAAGTTCTAAGTTGTAACTTACACCTAGAGATGTGCAGAAGCTGACTCTCCCACTTTGTTGAGCAAAATTTTATGACACTGATTCGTAACTTGTTCCAGATTTTGTATAGATTGATTTGTTGTATGTGTTTCGGAACTCACGCTTGGAACTTGTTCTTATTTTGCTTGATTTATGCATTTGAAATTTTATCCTTAGTCGGGGTTTTAAATCATCTACTTTTGTTGGTGGAGTTCAGATTGAAAAATAACCAAGGGAAAATTTTAATTAAATTTTCCATATCAACTAATACTGCAATTTGCATGTATGATGAACTAAGTTGAGCCTTGTAGAGGAATATATGCTCAAAATTACAGTGGTCGTTTGGTTTGAAAAATGAAGTTGGGAATCTGATTTTGTT

Coding sequences of Glyma01g06060

Limit To All Plant Sequences

>Glyma01g06060.2   sequence type=CDS   gene model=Glyma01g06060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCAAATGAGCCCTACTGGCGAACAAATTCAAGTTTTTCGCCTCCTCCGACGAGGTGGGATTTCAGATTTCAGTCTGAAGGTCTGTCATATGGTGTGAATGATGGTGTTCAACTCTATGGGTCTTCTACATCGGAAAACGATAAAGAAAGTAGGGGTTGGGTCAGAGGCAACCACCTATATGATCTTCACTATTCTGCTTCAGATGGTACTGGGATTTTCCTTAGCAGTCCATCTGACCTTTCTCAGGGTCCTCAGTGGACGCCTCCTGCAATACAAGAAATCAGTATTGACAATTATGAAACTTCGACTAGGAAAGATTCTCATCCCTCTGTGGGCCGGGTATCTTTTACTCCCAATAAGGAGGGAACATCTGTGAATCACTACTGTGGGGGTTCAACTTCATCTCAATCGGAAAGTAGTGAATCAGAGTCTACTACAAAATCACATTTATCCTCTGAGAGGAATTTCGCTAATCTTCGTTCATTCATGTCTAAGCCTATTCACCCTATGTCCTTTAATGACCTAACAACTACTAGGGATGCCTTTGATCCTGCAGTTACAGATTTTACAGAGTTTGATACTTCCACTCCACTCAGAGATGGCCAGCGTTGGAGTAGTGCCAGCAGTAGTCAGGAGTTTGCTGACGTTACCGAGTCATTTGAATTAGAAACACCTGGTCGCTCACATTTTCTGTCAGATGGATTTAAATGTGGCTTGTGTGAAAGATTTCTCTCACAGCGATCACCTTGGAGCTCCCGTCGTATTGTGAGAAGTGGAGACATGCCTACAATTGGGGTTCTTCCTTGTTGTCATGCTTTTCATGCTGAGTGTTTGGAGCAAGCGACGCCAAAGACCCGGAAAAGTGATCCTCCTTGCCCTGTGTGTGTCAAATTGGAGGAAAATTCCCCTGATCAACGGAGCCATTTGAGATTGAGGACTGGTTTTCCAAGGCTTAAATCATCTCGTGACGATGGACCGTCAAGACCTTGGGGATGTGTACAGGTAGGTGATTGTGTTGAAGGGGCTCTGCATGCACCACCAGGCAACACAATGTTGCTGCTTAATCGAAACCGCATTAAGAACCCTTCTTTGAAAGGAATTTCCAGGTAA

>Glyma01g06060.3   sequence type=CDS   gene model=Glyma01g06060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGTGTTCAACTCTATGGGTCTTCTACATCGGAAAACGATAAAGAAAGTAGGGGTTGGGTCAGAGGCAACCACCTATATGATCTTCACTATTCTGCTTCAGATGGTACTGGGATTTTCCTTAGCAGTCCATCTGACCTTTCTCAGGGTCCTCAGTGGACGCCTCCTGCAATACAAGAAATCAGTATTGACAATTATGAAACTTCGACTAGGAAAGGGAACATCTGTGAATCACTACTGTGGGGGTTCAACTTCATCTCAATCGGAAAGTAGTGAATCAGAGTCTACTACAAAATCACATTTATCCTCTGAGAGGAATTTCGCTAATCTTCGTTCATTCATGTCTAAGCCTATTCACCCTATGTCCTTTAATGACCTAACAACTACTAGGGATGCCTTTGATCCTGCAGTTACAGATTTTACAGAGTTTGATACTTCCACTCCACTCAGAGATGGCCAGCGTTGGAGTAGTGCCAGCAGTAGTCAGGAGTTTGCTGACGTTACCGAGTCATTTGAATTAGAAACACCTGGTCGCTCACATTTTCTGTCAGATGGATTTAAATGTGGCTTGTGTGAAAGATTTCTCTCACAGCGATCACCTTGGAGCTCCCGTCGTATTGTGAGAAGTGGAGACATGCCTACAATTGGGGTTCTTCCTTGTTGTCATGCTTTTCATGCTGAGTGTTTGGAGCAAGCGACGCCAAAGACCCGGAAAAGTGATCCTCCTTGCCCTGTGTGTGTCAAATTGGAGGAAAATTCCCCTGATCAACGGAGCCATTTGAGATTGAGGACTGGTTTTCCAAGGCTTAAATCATCTCGTGACGATGGACCGTCAAGACCTTGGGGATGTGTACAGGTAGGTGATTGTGTTGAAGGGGCTCTGCATGCACCACCAGGCAACACAATGTTGCTGCTTAATCGAAACCGCATTAAGAACCCTTCTTTGAAAGGAATTTCCAGGTAA

Predicted protein sequences of Glyma01g06060

Limit To All Plant Sequences

>Glyma01g06060.2   sequence type=predicted peptide   gene model=Glyma01g06060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPNEPYWRTNSSFSPPPTRWDFRFQSEGLSYGVNDGVQLYGSSTSENDKESRGWVRGNHLYDLHYSASDGTGIFLSSPSDLSQGPQWTPPAIQEISIDNYETSTRKDSHPSVGRVSFTPNKEGTSVNHYCGGSTSSQSESSESESTTKSHLSSERNFANLRSFMSKPIHPMSFNDLTTTRDAFDPAVTDFTEFDTSTPLRDGQRWSSASSSQEFADVTESFELETPGRSHFLSDGFKCGLCERFLSQRSPWSSRRIVRSGDMPTIGVLPCCHAFHAECLEQATPKTRKSDPPCPVCVKLEENSPDQRSHLRLRTGFPRLKSSRDDGPSRPWGCVQVGDCVEGALHAPPGNTMLLLNRNRIKNPSLKGISR*

>Glyma01g06060.3   sequence type=predicted peptide   gene model=Glyma01g06060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMVFNSMGLLHRKTIKKVGVGSEATTYMIFTILLQMVLGFSLAVHLTFLRVLSGRLLQYKKSVLTIMKLRLGKGTSVNHYCGGSTSSQSESSESESTTKSHLSSERNFANLRSFMSKPIHPMSFNDLTTTRDAFDPAVTDFTEFDTSTPLRDGQRWSSASSSQEFADVTESFELETPGRSHFLSDGFKCGLCERFLSQRSPWSSRRIVRSGDMPTIGVLPCCHAFHAECLEQATPKTRKSDPPCPVCVKLEENSPDQRSHLRLRTGFPRLKSSRDDGPSRPWGCVQVGDCVEGALHAPPGNTMLLLNRNRIKNPSLKGISR*

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