Glyma01g06030 - SoyBase

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Report for Sequence Feature Glyma01g06030

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5873669
stop:	5876124
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g06030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69530	AT	Annotation by Michelle Graham. TAIR10: expansin A1 \| chr1:26142034-26143051 FORWARD LENGTH=250	SoyBase	E_val: 1.00E-151	ISS
GO:0006949	GO-bp	Annotation by Michelle Graham. GO Biological Process: syncytium formation	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_C6TN48	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expansin A4 n=1 Tax=Glycine max RepID=C6TN48_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1J5S5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5S5_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma01g06030

Locus	Gene Symbol	Protein Name
	EXPA1	alpha-expansin gene 1

Expression Patterns of Glyma01g06030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g06030

Paralog	Evidence	Comments
Glyma02g12140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g06030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g050100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g06030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g06030

Limit To All Plant Sequences

>Glyma01g06030.2   sequence type=transcript   gene model=Glyma01g06030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCAATTTCAAAGTGTTTTTCTTAAACCGCTTATTATACCCTTTTGCGGTTTTTGGTCCCAACACAACAATTTTAAAAGCGTTAGTTAAAATTGTGACTGCCCCTATTGAAGGCTTCCAAGGTCTATAAATTGAGTGGCACCCTCCTTCAGTTTTTCTTCACACTCATCTACTCCACATTGTCCTCTCACCACTCTCCAATTGAAAAGGCTTCTTTATCAAAAGTAATTGCAAAATTCCATTTCATCATGTGAAGAAGTACACATATGTGCACATTTTTAGCTAAATGTTGCAATTAGAAGGAAATTAAATGATTATTATTATTGTTAATTTTTTTTCAGGAAAAATGGCTCAAGTTTGTTTGCTCTTGGTGGGGCTTCTCACAATGTTCTCCTCTGCCTATGGCTATGGATATGGTGGTGGCTGGGTTAATGCACATGCCACCTTCTATGGAGGAAGTGATGCCTCAGGAACAATGGGTAAGCAACAAAAATAAAAATAAGAAGTTCCCATTTTTATTATAAAATGTGGGGTTTTGGTGGATAATCTTATGACCCTTTTTACTAATTTGTTTGGTGATGAAATTTGTTTAGGTGGGGCATGTGGATATGGCAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGTCTTAGTTGTGGCTCATGCTATGAAATAAGGTGTGTGAATGACCATAGGTGGTGCCTCCCTGGCTCCATTATGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCAAACAATGCAGGAGGATGGTGCAACCCTCCTATGCACCATTTTGACCTCTCTCAGCCTGTCTTCCTTCGCATTGCACAATACAGAGCAGGAATTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCCTACTTTAACTTGGTCCTCATAACAAACGTAGGAGGTGCTGGAGATGTTCATGGTGTGGCCATCAAAGGGTCAAGAACTGGGTGGATGCCAATGTCCAGAAACTGGGGTCAAAATTGGCAAAGCAACAACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACCACTAGTGATGGCCGTACAGTGGTGTCCTACAATGTTGCCCCTGCTGGTTGGTCCTTCGGCCAAACCTACACTGGTGCTCAATTCCGCTAGAGAGGCCTTAATAATTGTTCACAAGTTGAAGTTCCAAATATATTTAGTTACACTACATATGGTATATGCTATAATTCCTCAATTTAAGTGTTAGTGTATGACTAAAAAAAAAAAAAAAAATAGTATACTAAGGTATTAAAATAGTATGCTACTTGGTGGAGGAGGGGGTGGGGTCAATTGGATCACAAAATGTTTAAGGGCTTATTTTAAACTGGCTCTTGATCATTTTTTATTGGGTCAAAAGGGGTTCCTAATTCTAGGGTTCTTATTGATTATTGGGGAATTTTAATTTTTCATTTCTGAAAGCTTTTTCAACCTTTTTGCTGCTGAAAGCTAGCAGAGAGGGAGATTTTATATTTTATATTTGTGGCCTACTAAATTGGAGGAGGTGGACTGTTGTACCACCCGCCATTAGTATTGGAGCAGTTTTTTTGGTTATTTTTGGTCCCTATTGGGATTATTTAGAAGCATTGCTTGCTTACTCATCCTTTGTAAGCAGCCATGGCTAAGTATGTCTTTGGTTGTACCACTGGAAGTGTAAATTTTCCTATTTCTGCATTTAATAGAAAGTTGCAGTAATTTACTAGTACTATATTCTCTTGTCTTCGATTTATTCTGGTAATTATTCTGTTCTGTACATGAAAATGAACAAAAAAAATCTAAATTAAGAAGGGT

Coding sequences of Glyma01g06030

Limit To All Plant Sequences

>Glyma01g06030.1   sequence type=CDS   gene model=Glyma01g06030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGTTTGTTTGCTCTTGGTGGGGCTTCTCACAATGTTCTCCTCTGCCTATGGCTATGGATATGGTGGTGGCTGGGTTAATGCACATGCCACCTTCTATGGAGGAAGTGATGCCTCAGGAACAATGGGTGGGGCATGTGGATATGGCAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGTCTTAGTTGTGGCTCATGCTATGAAATAAGGTGTGTGAATGACCATAGGTGGTGCCTCCCTGGCTCCATTATGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCAAACAATGCAGGAGGATGGTGCAACCCTCCTATGCACCATTTTGACCTCTCTCAGCCTGTCTTCCTTCGCATTGCACAATACAGAGCAGGAATTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCCTACTTTAACTTGGTCCTCATAACAAACGTAGGAGGTGCTGGAGATGTTCATGGTGTGGCCATCAAAGGGTCAAGAACTGGGTGGATGCCAATGTCCAGAAACTGGGGTCAAAATTGGCAAAGCAACAACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACCACTAGTGATGGCCGTACAGTGGTGTCCTACAATGTTGCCCCTGCTGGTTGGTCCTTCGGCCAAACCTACACTGGTGCTCAATTCCGCTAG

>Glyma01g06030.2   sequence type=CDS   gene model=Glyma01g06030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCTTTTTACTAATTTGTTTGGTGATGAAATTTGTTTAGGTGGGGCATGTGGATATGGCAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGTCTTAGTTGTGGCTCATGCTATGAAATAAGGTGTGTGAATGACCATAGGTGGTGCCTCCCTGGCTCCATTATGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCAAACAATGCAGGAGGATGGTGCAACCCTCCTATGCACCATTTTGACCTCTCTCAGCCTGTCTTCCTTCGCATTGCACAATACAGAGCAGGAATTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCCTACTTTAACTTGGTCCTCATAACAAACGTAGGAGGTGCTGGAGATGTTCATGGTGTGGCCATCAAAGGGTCAAGAACTGGGTGGATGCCAATGTCCAGAAACTGGGGTCAAAATTGGCAAAGCAACAACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACCACTAGTGATGGCCGTACAGTGGTGTCCTACAATGTTGCCCCTGCTGGTTGGTCCTTCGGCCAAACCTACACTGGTGCTCAATTCCGCTAG

Predicted protein sequences of Glyma01g06030

Limit To All Plant Sequences

>Glyma01g06030.1   sequence type=predicted peptide   gene model=Glyma01g06030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQVCLLLVGLLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPMHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTYTGAQFR*

>Glyma01g06030.2   sequence type=predicted peptide   gene model=Glyma01g06030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLFTNLFGDEICLGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPMHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTYTGAQFR*

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