SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02960 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr2:862346-863980 REVERSE LENGTH=271 | SoyBase | E_val: 1.00E-106 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1609 | KOG | Protein involved in mRNA turnover and stability | JGI | ISS | |
| PTHR23012 | Panther | MEMBRANE ASSOCIATED RING FINGER | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF12428 | PFAM | Protein of unknown function (DUF3675) | JGI | ISS | |
| UniRef100_G7KF80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase MARCH3 n=1 Tax=Medicago truncatula RepID=G7KF80_MEDTR | SoyBase | E_val: 1.00E-140 | ISS |
| UniRef100_UPI00018C6E5A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C6E5A related cluster n=1 Tax=unknown RepID=UPI00018C6E5A | SoyBase | E_val: 0 | ISS |
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Glyma01g05800 not represented in the dataset |
Glyma01g05800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g047700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g05800.1 sequence type=CDS gene model=Glyma01g05800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCGGTGGCGCAGCCGCCTTCCGAGCCGTCTCCTCCTCCGGCCCCCGTGAATGCTGACGCTTCCGGGAGCTCCGGCACCGCTCCGGTGGAGGATTGTGACGGAGAGGGCGGCGGCGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAACTTGGAGACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCATATCAACCTGGGTATACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACTATTGATATAGGAGGTGGCTGGACAATATCTGGCACACCCTTAGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAAGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAACGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCCCTTTTACTCCTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAGTTTTTTCTCCCTTTTCTTGCTTCGTGCTGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGTCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGACCACCCACACTACACCAGGAACAAGTATAA
>Glyma01g05800.1 sequence type=predicted peptide gene model=Glyma01g05800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDHLVVFVDRLARPVPVDPVAQPPSEPSPPPAPVNADASGSSGTAPVEDCDGEGGGEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDNSDDDPSSFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTLHQEQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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