Glyma01g05770 - SoyBase

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Report for Sequence Feature Glyma01g05770

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5507146
stop:	5510888
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g05770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22260	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr5:7367707-7370192 REVERSE LENGTH=672	SoyBase	E_val: 8.00E-111	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0010208	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen wall assembly	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048655	GO-bp	Annotation by Michelle Graham. GO Biological Process: tapetal layer morphogenesis	SoyBase	N/A	ISS
GO:0055046	GO-bp	Annotation by Michelle Graham. GO Biological Process: microgametogenesis	SoyBase	N/A	ISS
GO:0071367	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR16286	Panther	MIXED-LINEAGE LEUKEMIA 5, MLL5	JGI		ISS
PTHR16286:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7KF85	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase MLL5 n=1 Tax=Medicago truncatula RepID=G7KF85_MEDTR	SoyBase	E_val: 1.00E-162	ISS
UniRef100_I1J5Q9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J5Q9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g05770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g05770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g047400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g05770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g05770

Limit To All Plant Sequences

>Glyma01g05770.2   sequence type=CDS   gene model=Glyma01g05770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGCCAATGTGGTCTTTTCAACATGAAGTTCATCACCACCCACCTTTACATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCATTGAATCGTCACTGCAAGCATTGTCAATACGTTGGCTGGGGCAACCATTTCATTTGCAATAAGTATCACTTTGTGTTGCCCTCAAAGGAGGCACTGGGTACCTGCACAAGCTGTGATGCAATTACTACAACTAATAATGGTAAGTCCAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTTTGTGTCAATGGATTGGAAATGGGTTCGAGTTTAGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCTACGGATTGCAAGCAAGTTTGAATGACATTTCACATAAGAGAGGAATGAAACTTAGACTTATGAATGGAATAGCATACAATGAGACATGGTTTGGCAGTTGGGGTTACAAATTTGGTCGAGGATGCTTTGGTGTAACTCAATCCATGTACCACAAGGCCATACAAGCAATAAGAAGCATGTCATTATACTTGATCATACACCACATTGCCAATTCTAGCCATGGCATTCCACTAATCTTCTCAAGGAACCAGACACTTTCAGATCAATCCCTAGTGACCCTTGGTGACCTATTTTGTTACATTTCCTATAAAACAAATGCCTTAGTTGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTTATTGTTGAGGCCTTGAAAAGAACAGAGTTTAAATGGGTTTCAAGACAAGAAGTTAGAGATGCTGCTCGTGCATACATTAGTGACACAAGTTTGGTAGATTTTGTGTTGAGATTAAAACCAATTATGAGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGGATAATTCTTGGCACTAAGTATTTTATTAAAGATTACTTTGGAGATATTCCTCACCAAGTTGAATTAGGCTCCGATGATAAACTCAACATTTATTGTACAATTTGGTTGAGAAACAATCAAATATGTGAAAGTGATATGAACAATGGTATAATGGATTGCACTTGTGGAACTATAGAAGATGATGGTGAGAGGATGGTCTCGTGTGATATTTGTGAAATTTGGCAACATACTAGGTGTGTTTGA

Predicted protein sequences of Glyma01g05770

Limit To All Plant Sequences

>Glyma01g05770.2   sequence type=predicted peptide   gene model=Glyma01g05770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMPMWSFQHEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYVGWGNHFICNKYHFVLPSKEALGTCTSCDAITTTNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSSLAGNQIMEFWNRLCYGLQASLNDISHKRGMKLRLMNGIAYNETWFGSWGYKFGRGCFGVTQSMYHKAIQAIRSMSLYLIIHHIANSSHGIPLIFSRNQTLSDQSLVTLGDLFCYISYKTNALVETNCRWSPKRIEMATRVIVEALKRTEFKWVSRQEVRDAARAYISDTSLVDFVLRLKPIMRSEFLSAIPLAARIILGTKYFIKDYFGDIPHQVELGSDDKLNIYCTIWLRNNQICESDMNNGIMDCTCGTIEDDGERMVSCDICEIWQHTRCV*

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