SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22260 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr5:7367707-7370192 REVERSE LENGTH=672 | SoyBase | E_val: 8.00E-111 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0010208 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen wall assembly | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tapetal layer morphogenesis | SoyBase | N/A | ISS |
| GO:0055046 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microgametogenesis | SoyBase | N/A | ISS |
| GO:0071367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to brassinosteroid stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR16286 | Panther | MIXED-LINEAGE LEUKEMIA 5, MLL5 | JGI | ISS | |
| PTHR16286:SF4 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_G7KF85 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase MLL5 n=1 Tax=Medicago truncatula RepID=G7KF85_MEDTR | SoyBase | E_val: 1.00E-162 | ISS |
| UniRef100_I1J5Q9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J5Q9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g05770 not represented in the dataset |
Glyma01g05770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g047400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g05770.2 sequence type=CDS gene model=Glyma01g05770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGCCAATGTGGTCTTTTCAACATGAAGTTCATCACCACCCACCTTTACATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCATTGAATCGTCACTGCAAGCATTGTCAATACGTTGGCTGGGGCAACCATTTCATTTGCAATAAGTATCACTTTGTGTTGCCCTCAAAGGAGGCACTGGGTACCTGCACAAGCTGTGATGCAATTACTACAACTAATAATGGTAAGTCCAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTTTGTGTCAATGGATTGGAAATGGGTTCGAGTTTAGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCTACGGATTGCAAGCAAGTTTGAATGACATTTCACATAAGAGAGGAATGAAACTTAGACTTATGAATGGAATAGCATACAATGAGACATGGTTTGGCAGTTGGGGTTACAAATTTGGTCGAGGATGCTTTGGTGTAACTCAATCCATGTACCACAAGGCCATACAAGCAATAAGAAGCATGTCATTATACTTGATCATACACCACATTGCCAATTCTAGCCATGGCATTCCACTAATCTTCTCAAGGAACCAGACACTTTCAGATCAATCCCTAGTGACCCTTGGTGACCTATTTTGTTACATTTCCTATAAAACAAATGCCTTAGTTGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTTATTGTTGAGGCCTTGAAAAGAACAGAGTTTAAATGGGTTTCAAGACAAGAAGTTAGAGATGCTGCTCGTGCATACATTAGTGACACAAGTTTGGTAGATTTTGTGTTGAGATTAAAACCAATTATGAGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGGATAATTCTTGGCACTAAGTATTTTATTAAAGATTACTTTGGAGATATTCCTCACCAAGTTGAATTAGGCTCCGATGATAAACTCAACATTTATTGTACAATTTGGTTGAGAAACAATCAAATATGTGAAAGTGATATGAACAATGGTATAATGGATTGCACTTGTGGAACTATAGAAGATGATGGTGAGAGGATGGTCTCGTGTGATATTTGTGAAATTTGGCAACATACTAGGTGTGTTTGA
>Glyma01g05770.2 sequence type=predicted peptide gene model=Glyma01g05770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMPMWSFQHEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYVGWGNHFICNKYHFVLPSKEALGTCTSCDAITTTNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSSLAGNQIMEFWNRLCYGLQASLNDISHKRGMKLRLMNGIAYNETWFGSWGYKFGRGCFGVTQSMYHKAIQAIRSMSLYLIIHHIANSSHGIPLIFSRNQTLSDQSLVTLGDLFCYISYKTNALVETNCRWSPKRIEMATRVIVEALKRTEFKWVSRQEVRDAARAYISDTSLVDFVLRLKPIMRSEFLSAIPLAARIILGTKYFIKDYFGDIPHQVELGSDDKLNIYCTIWLRNNQICESDMNNGIMDCTCGTIEDDGERMVSCDICEIWQHTRCV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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