SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G27090 | AT | Annotation by Michelle Graham. TAIR10: glycine-rich protein | chr1:9404041-9406098 REVERSE LENGTH=420 | SoyBase | E_val: 5.00E-63 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR24286 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24286:SF57 | Panther | JGI | ISS | ||
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_Q6AVI7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AVI7_ORYSJ | SoyBase | E_val: 2.00E-30 | ISS |
| UniRef100_UPI0002337306 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337306 related cluster n=1 Tax=unknown RepID=UPI0002337306 | SoyBase | E_val: 3.00E-167 | ISS |
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Glyma01g05765 not represented in the dataset |
Glyma01g05765 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g047300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g05765.1 sequence type=CDS gene model=Glyma01g05765 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGTGTACCTACTATTGTGTATTACGATGGTGACATGATTTCATCATCTGAAAGGATATTGTTTGAATATCCTAGTGGTTCTCAAGTCATTAGAATAAGCGAGAATATATCACTTGATGCTTTAAGGAAAACAATTATGGATGCCATCCAAGGGAGCCCAAAAGCCTCACTTAACGTGAACAAGGAGCAGGAAGAGGTTCTACGCTCCAAACCCTCCATCCTCGCCCTCATCGATGAGCTCGATAAGCTCCGGCAACCTCTCGCCACCGCTCTCTCCGAAGAGCTCCAAATCAACGACACATCTTCTCAAAACCCTCACCATGAGACCGAGATCGAAAACGAAACCCTAGCCGAGAGCTCCGGCTCGATTGAGCCGAACTCGAACTCGAGGAATGATGTCGTTGTGGAGGACCTGCTTAATTTTCTCTATTTTGGTTCACTTTTCGATGTGAAGAGTGACTTTGTGTCCACGATGCTTACCAGAACGCATGAGCGTGGCTGCTGCTTGACCTACGACTACGTCATCGACGACGCCACCGATCTGCTCGGCGAGAAGGACTTGGATTCGATCTCTGCACTGAGAGGGTTGCTTGTTTCGCGGCCCGCGGATTCAAGCTTTTCACACAAGAGTGTGCTGCACTGCTGCGTGGAACATGCCAAGCTGTGGCTTGCTAAGTCGGAGCAACCCATTAGGCCTGATGCTGATGTTACTTCAGTCCATTTAGATGAGAATGTATACATTGGAGCTCTATATATTAATCCTTGGAGATGGATGGAACCTGAAAATGAGGAAAAGAGAAATTGGAGAACTAGTCCATTCTATGCACCCTTTGGAGGAGGGGCTAGATTCTGTCCAGGAGCAGAGTTGGCTCGCCTATAA
>Glyma01g05765.1 sequence type=predicted peptide gene model=Glyma01g05765 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESVPTIVYYDGDMISSSERILFEYPSGSQVIRISENISLDALRKTIMDAIQGSPKASLNVNKEQEEVLRSKPSILALIDELDKLRQPLATALSEELQINDTSSQNPHHETEIENETLAESSGSIEPNSNSRNDVVVEDLLNFLYFGSLFDVKSDFVSTMLTRTHERGCCLTYDYVIDDATDLLGEKDLDSISALRGLLVSRPADSSFSHKSVLHCCVEHAKLWLAKSEQPIRPDADVTSVHLDENVYIGALYINPWRWMEPENEEKRNWRTSPFYAPFGGGARFCPGAELARL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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