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Report for Sequence Feature Glyma01g05500

Feature Type:gene_model
Chromosome:Gm01
Start:5324075
stop:5325556
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g05500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15480AT Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 73B5 | chr2:6758817-6763398 FORWARD LENGTH=494 SoyBaseE_val: 7.00E-117ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0035251GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity SoyBaseN/AISS
GO:0080043GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_G7KDU4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Anthocyanin 3'-O-beta-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7KDU4_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1J5P9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5P9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g05500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g05500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g046300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g05500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g05500
>Glyma01g05500.1   sequence type=CDS   gene model=Glyma01g05500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGTTCAGAATATCAAATTGAGGATGATAACCTGAAGCTTAAGGTTATCTTCCTTCCATTTTTATCAATTAGTCACATAATTCCCATAGTGGACATGGCCAGAATCTTCGCCATGCATGACGTGGACGTCACTATCATCACCACCACGTCCAACGCCGCGCTTTTCCAAAGCTCCATCAGTCGCGGTCAAAACATCAGGACGCATGTCATGAAATTTCCGGCCGAACAAGTCGGTCTTCCTGTCGGCGTTGAAACTTTCAGCGCCGACACGCCACCTGACATGTCACCGAAAATCTATGCTGGCCTCGAGATTCTGAGGCCAGAGATCGAAAACCTCTTCAAGGAGCTACAAGCTGATTGCATAGTGAGTGACATGTTCCACCCTTGGACCGTGGACACCGCAGAAAAACTAGGTATTCCTAGAATCATTTTCTACGCCGCGAGTGTTCTGTCACGTTGTGCTGTGCACTCGTTGGAGCAACACGAGGTTCACACCAAAGTGGAGTGTGACAGTGAGAAGTTCACGTTGGTAGGTTTGCCGCACGAGTTGGAGATGACGAGGTTGCAGTTGCCGGATTGGATGAGGAAGCCGAACATGTATGCAATGTTGATGAAGGTGGTTAATGATTCCGCTAGGAAGAGTTTTGGGGCAGTGTTCAATAGTTTTCATGAGTTGGAGGGTGATTATGAGGAGCATTACAAGAGGGTGTGTGGAACCAAGTGTTGGAGCTTGGGTCCGGTTTCGATGTGGGTGAACCATGATGATTTGGATAAGGTTGAAAGAGGACACCATGTTAAAACACAAGGAGAAGAAGAAGGGTGGCTTGAATGGCTTAATAAAAAGAAAGAGGGTTCTGTTTTGTATGTTAGTTTTGGGAGCTTGAATAGGTTTCCTAGTGATCAACTTGTTGAGATAGCTCATGCACTTGAAAGTTCTGGTTATGATTTCATATGGGTGGTGAGAAAGAACAATGATGAGGGTGAGAATAGTTTTATGGAGGAGTTTGAAGAGAGAGTGAAGGGAAGCAAAAAGGGGTATTTGATATGGGGTTGGGCGCCACAGTTGTTGATATTGGAGAACCGTGCAATTGGGGGGATGGTGAGTCACTGTGGTTGGAACACGGTGGTTGAGAGCATGAATGTAGGGTTACCAATGGTGACATGGCCTTTGTTTGCGGAGCATTTCTTCAATGAGAAGCTTGTGGTTGATGTGTTGAAGATTGGGGTGCCAGTGGGGACCAAAGAGTGGAGGAATTGGAATGAGTTTGGGAGTGAGGTGGTGACAAGAGAGGAGATTGAAAAGGCTATTGGTGTGGTCATGGATGGTGGAGAAGAAGGTGAAGGAATGAGACAGAGAGCCAAGGCTCTTAGTAATGCGGCAAAAAAGGCTATAAAGCTTGGTGGGTCTTCTCATAACAATATGATGGAACTGATTCGGGAGCTCAAGGAATTGAAACTCAGGAGGAAGCCTCAATAA
Predicted protein sequences of Glyma01g05500
>Glyma01g05500.1   sequence type=predicted peptide   gene model=Glyma01g05500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRSEYQIEDDNLKLKVIFLPFLSISHIIPIVDMARIFAMHDVDVTIITTTSNAALFQSSISRGQNIRTHVMKFPAEQVGLPVGVETFSADTPPDMSPKIYAGLEILRPEIENLFKELQADCIVSDMFHPWTVDTAEKLGIPRIIFYAASVLSRCAVHSLEQHEVHTKVECDSEKFTLVGLPHELEMTRLQLPDWMRKPNMYAMLMKVVNDSARKSFGAVFNSFHELEGDYEEHYKRVCGTKCWSLGPVSMWVNHDDLDKVERGHHVKTQGEEEGWLEWLNKKKEGSVLYVSFGSLNRFPSDQLVEIAHALESSGYDFIWVVRKNNDEGENSFMEEFEERVKGSKKGYLIWGWAPQLLILENRAIGGMVSHCGWNTVVESMNVGLPMVTWPLFAEHFFNEKLVVDVLKIGVPVGTKEWRNWNEFGSEVVTREEIEKAIGVVMDGGEEGEGMRQRAKALSNAAKKAIKLGGSSHNNMMELIRELKELKLRRKPQ*






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