Glyma01g05490 - SoyBase

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Report for Sequence Feature Glyma01g05490

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5313628
stop:	5317389
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g05490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14310	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr1:4885049-4886672 FORWARD LENGTH=254	SoyBase	E_val: 5.00E-119	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008967	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3085	KOG	Predicted hydrolase (HAD superfamily)	JGI		ISS
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI		ISS
PTHR12725:SF5	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN CONTAINING 3	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_G7KDV9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Haloacid dehalogenase-like hydrolase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KDV9_MEDTR	SoyBase	E_val: 1.00E-143	ISS
UniRef100_I1J5P6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5P6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g05490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g05490 not represented in the dataset	Glyma01g05490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g05490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g046200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g05490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g05490

Limit To All Plant Sequences

>Glyma01g05490.2   sequence type=transcript   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAACCTAAAAAATCATCTCATTTTAAAAAAATTCTATTATTTTCTTTATTTTTACTTTCTTTGTCAAATCAAACACATAGCTTAGTTCTTAACGACGGGGAAGAGAAATGAGAAGATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAACACTTGATGTGGTTTGTAGCTCTGATTTGATCATGCTGATAACTAGCTAGCATTTTAATTAGGTGGATGACTAACACTGCCCTTCTTAATTTTCTATGCATGATGTAAAAACATATGTGACCACCTTGTTTGCCAAGTTTGGTAAATAATATGTTGCAACCAAAAATGATGATATCCGTTACAAAGGAGACAGGATTTTATCCTCCAGATGTACCATATATCTATCATCCATGACCCTAACATACCGTCCATTGTGAAAGGTCAGGTGTAATGAGAAGAGGATACAAGTTTCTGATTTTCACCTAAATACCTCGGACCTACAAATTACAAAGTGAAGCAACTCCTATGTAATTGCTTTCAATATGACTAGAAACCGTGTTCTCAAGGGTCTGAATCTGATTAATTTGAAAAATAATCTGTTTATATTAATAATTATTAAGTCTCACTTTGTTTTTA

>Glyma01g05490.3   sequence type=transcript   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAACCTAAAAAATCATCTCATTTTAAAAAAATTCTATTATTTTCTTTATTTTTACTTTCTTTGTCAAATCAAACACATAGCTTAGTTCTTAACGACGGGGAAGAGAAATGAGAAGATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTAATAGTAATAAGGCATATGATGCATTGCTGTTGGATGCTGGGGGCACCCTATTGCAATTGGCAAAGCCAGTTGAGGAGATTTATGCCACTATTGGATCCAAATATGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAACACTTGATGTGGTTTGTAGCTCTGATTTGATCATGCTGATAACTAGCTAGCATTTTAATTAGGTGGATGACTAACACTGCCCTTCTTAATTTTCTATGCATGATGTAAAAACATATGTGACCACCTTGTTTGCCAAGTTTGGTAAATAATATGTTGCAACCAAAAATGATGATATCCGTTACAAAGGAGACAGGATTTTATCCTCCAGATGTACCATATATCTATCATCCATGACCCTAACATACCGTCCATTGTGAAAGGTCAGGTGTAATGAGAAGAGGATACAAGTTTCTGATTTTCACCTAAATACCTCGGACCTACAAATTACAAAGTGAAGCAACTCCTATGTAATTGCTTTCAATATGACTAGAAACCGTGTTCTCAAGGGTCTGAATCTGATTAATTTGAAAAATAATCTGTTTATATTAATAATTATTAAGTCTCACTTTGTTTTTA

>Glyma01g05490.4   sequence type=transcript   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAACCTAAAAAATCATCTCATTTTAAAAAAATTCTATTATTTTCTTTATTTTTACTTTCTTTGTCAAATCAAACACATAGCTTAGTTCTTAACGACGGGGAAGAGAAATGAGAAGATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGCAGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAACACTTGATGTGGTTTGTAGCTCTGATTTGATCATGCTGATAACTAGCTAGCATTTTAATTAGGTGGATGACTAACACTGCCCTTCTTAATTTTCTATGCATGATGTAAAAACATATGTGACCACCTTGTTTGCCAAGTTTGGTAAATAATATGTTGCAACCAAAAATGATGATATCCGTTACAAAGGAGACAGGATTTTATCCTCCAGATGTACCATATATCTATCATCCATGACCCTAACATACCGTCCATTGTGAAAGGTCAGGTGTAATGAGAAGAGGATACAAGTTTCTGATTTTCACCTAAATACCTCGGACCTACAAATTACAAAGTGAAGCAACTCCTATGTAATTGCTTTCAATATGACTAGAAACCGTGTTCTCAAGGGTCTGAATCTGATTAATTTGAAAAATAATCTGTTTATATTAATAATTATTAAGTCTCACTTTGTTTTTA

Coding sequences of Glyma01g05490

Limit To All Plant Sequences

>Glyma01g05490.1   sequence type=CDS   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTAATAGTAATAAGGCATATGATGCATTGCTGTTGGATGCTGGGGGCACCCTATTGCAATTGGCAAAGCCAGTTGAGGAGATTTATGCCACTATTGGATCCAAATATGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGCAGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAA

>Glyma01g05490.2   sequence type=CDS   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAA

>Glyma01g05490.3   sequence type=CDS   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTAATAGTAATAAGGCATATGATGCATTGCTGTTGGATGCTGGGGGCACCCTATTGCAATTGGCAAAGCCAGTTGAGGAGATTTATGCCACTATTGGATCCAAATATGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAA

>Glyma01g05490.4   sequence type=CDS   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGCAGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAA

Predicted protein sequences of Glyma01g05490

Limit To All Plant Sequences

>Glyma01g05490.1   sequence type=predicted peptide   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTTLMRCSHANALFRALKPKPRNSSLPLSSMAINKGNSNKAYDALLLDAGGTLLQLAKPVEEIYATIGSKYGVTVDPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITFLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDEVNVEACKALHIGDDQKADKLGANAVGIDCCRLWGIDVKTFSDIQIRILNSEA*

>Glyma01g05490.2   sequence type=predicted peptide   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTTLMRCSHANALFRALKPKPRNSSLPLSSMAINKGVTVDPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITFLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDEVNVEACKALHIGDDQKADKLGANAVGIDCWLWGIDVKTFSDIQIRILNSEA*

>Glyma01g05490.3   sequence type=predicted peptide   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTTLMRCSHANALFRALKPKPRNSSLPLSSMAINKGNSNKAYDALLLDAGGTLLQLAKPVEEIYATIGSKYGVTVDPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITFLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDEVNVEACKALHIGDDQKADKLGANAVGIDCWLWGIDVKTFSDIQIRILNSEA*

>Glyma01g05490.4   sequence type=predicted peptide   gene model=Glyma01g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTTLMRCSHANALFRALKPKPRNSSLPLSSMAINKGVTVDPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITFLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDEVNVEACKALHIGDDQKADKLGANAVGIDCCRLWGIDVKTFSDIQIRILNSEA*

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