Glyma01g05470 - SoyBase

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Report for Sequence Feature Glyma01g05470

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5303847
stop:	5307805
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g05470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46210	AT	Annotation by Michelle Graham. TAIR10: Fatty acid/sphingolipid desaturase \| chr2:18977542-18978891 FORWARD LENGTH=449	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016717	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG4232	KOG	Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase	JGI		ISS
PTHR19353	Panther	FATTY ACID DESATURASE 2	JGI		ISS
PF00173	PFAM	Cytochrome b5-like Heme/Steroid binding domain	JGI		ISS
PF00487	PFAM	Fatty acid desaturase	JGI		ISS
UniRef100_D3YLK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Delta-8 sphingolipid desaturase n=1 Tax=Vernicia fordii RepID=D3YLK3_VERFO	SoyBase	E_val: 0	ISS
UniRef100_I1J5P4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5P4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g05470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g05470

Paralog	Evidence	Comments
Glyma02g11820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g05470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g046000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g05470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g05470

Limit To All Plant Sequences

>Glyma01g05470.2   sequence type=transcript   gene model=Glyma01g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATCCACAGCCCTAAAATCAAATGTGAACCCAAATCGCTCGCATTCGTGGTTTTCCCAAAAAATATCTTTTGAACTGTCCCACACCAATTCAGTAAACTGCAACGAAAGTCGAAACCCACTCTCTCTATTCTATAAGTTGTAACACCCAGTCCTCCATATAAGAGAGAGCCGTTGAAAGAAGAGGGACCATAGAATCCAGCCAAGTAATAACGTTGGGCCACACCACACAGGTCATAACCACCCCACTTGCGTTTCTGCTGTCCCAGTGATTTGTGTTGTTTTTGGTTAACACAAGCAATGGAGGTTGTTGAGAAGGAGAAGAAGTACATAACCTCAGAGGAGCTGAAGGGTCACAACAAGGAGGGAGATTTATGGATCTCAATTCAAGGTAAGGTGTACAATGTCTCAGATTGGGTCAAGGAGCACCCTGGTGGTGATGTTCCAATCTCAAACCTTGCTGGCCAGGATGTCACTGATGCATTCATAGCATACCATCCTGGCACAGCATGGTCACACCTTGAAAAATTCTTCACTGGCTACCACCTCAGTGACTTCAAGGTCTCTGAGGTGTCCAAAGACTACAGAAAGCTTGCATCTGAGTTCTCAAAATTGGGTCTTTTTGACACCAAAGGGCATGTCACTTCATGCACCCTTGCATCTGTTGCTGTTATGTTCCTCATTGTACTCTATGGTGTTCTGAGGTGCACTAGTGTGTGGGCTCATTTGGGTTCAGGCATGCTCTTAGGGTTGCTTTGGATGCAAAGTGCTTATGTGGGCCATGATTCTGGCCACTATGTGGTTATGACAACCAATGGTTTCAACAAGGTTGCACAGATCCTCTCTGGGAACTGCTTGACCGGGATAAGCATTGCTTGGTGGAAGTGGACTCACAATGCTCACCACATTGCGTGCAACAGCCTTGACCATGACCCTGATCTGCAGCACATGCCGGTCTTTGCAGTTTCGTCGCGGTTCTTCAATTCCATAACCTCTCATTTCTATGGGAGGAAGTTGGAGTTTGATTTCATTGCTAGGTTCTTGATCTGCTACCAGCACTTTACTTTTTACCCGGTAATGTGTGTTGCCAGGGTCAACTTGTATCTGCAGACAATTCTGCTATTGTTTTCGAGGCGAAAAGTGCAGGATAGAGCCTTGAACATAATGGGGATCCTTGTGTTTTGGACTTGGTTCCCTCTTTTAGTGTCTTGCCTGCCAAATTGGCCTGAGAGGGTTATGTTTGTGCTTGCTAGCTTTGCTGTTTGTTCCATCCAGCACATTCAGTTCTGTTTGAATCACTTTGCTGCAAATGTATATGTCGGGCCACCGAGTGGGAATGACTGGTTTGAGAAGCAGACAAGTGGTACATTGGATATCTCTTGTGCCTCTTCGATGGATTGGTTTTTCGGTGGCTTGCAGTTTCAGCTTGAGCATCATTTGTTTCCAAGGCTACCTCGGTGCCAATTGAGGAAGATTTCGCCTTTGGTTAGTGACCTTTGCAAGAAGCATAATTTGCCTTATAGGAGCTTGTCATTTTGGGAGGCCAATCAGTGGACAATTAGGACCCTCAGGACTGCTGCCCTACAAGCTAGGGACTTAACAAACCCTGCCCCTAAGAATTTGTTGTGGGAAGCTGTTAATACCCATGGCTGAGGCATTTGGAGTTTTTAGAGTTTAGGATTTTGTCAAGGTCTTTTTTTTTTTGTTTTCTCTTTAAAAAGAAAAAAAATTCTCATTGTGATTTTGCTAGCCCCCACTTTTCCAGATTGGGCTTTGAATTTAACTTTTTGTTAGGTGTGGTGTACAAATGGATGGTGATCCAGATGTTACTGCAGTTCATGTGCTTTGCATCAATACAAATTCATATCATGTATGCCTTTTTGCCTTTTCACTTCTTTTTCCTTATCTTGGAATAGGTTTCTTAATGTCTGAAAGATATTATACCATGGTTGATCTTAATAAAGATAGAAAGATTTCATCAGATTGTGTATTTATGCACTTTTTTATTCACCAGTTGTTGAGTAGAATATTTCTTCTTTTATTCTGGTTTGTTGGAGAGAGAGGATGGAATTATAGCAATATGTCATTGATTTTCAAGCCTTATAGTTTGTTCCTGAAAAAACAAAAAGAAAATCAAGGAGCTCTGTTATAATATGTCATTGTTATGGCTCAACCCTTGTATTCCAAGTGAAGGCATCTTGTGAGTCAGCAATTTGCTGGCAGTGAGGCGCCATCAGAATGAATTTTGCTTTTGCTAGAAGAATGATTCATGCTGGAAGAGATTAATCTTGTGGCAACTGGCATGGCATTAACAAAGTTAAAGAAATGTTGATTCTCAGCAACAGCAAGATAAATTCCACAGTAAAGCAATTTTTATAAGGGAAAGTATTGGTGAGTAAGCAAAGCTAGAGTGGATCAATTTATGTATTTGAGGCCATCAGAGTGAATTTGAATTTGAATTTGCTTAAGGTGGCACCAGCAATAGTAATGGTGGTTCTCACCTGGCTAGAATGGATTAATTAATGTATATGAGACCATCAGATTGAATTTGAATCTGGCTTCTGCAAGTAGAATAGCTTCATGTTGCAAGTAGTAATTGGGAATGGAAACAGA

Coding sequences of Glyma01g05470

Limit To All Plant Sequences

>Glyma01g05470.1   sequence type=CDS   gene model=Glyma01g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGTTGAGAAGGAGAAGAAGTACATAACCTCAGAGGAGCTGAAGGGTCACAACAAGGAGGGAGATTTATGGATCTCAATTCAAGGTAAGGTGTACAATGTCTCAGATTGGGTCAAGGAGCACCCTGGTGGTGATGTTCCAATCTCAAACCTTGCTGGCCAGGATGTCACTGATGCATTCATAGCATACCATCCTGGCACAGCATGGTCACACCTTGAAAAATTCTTCACTGGCTACCACCTCAGTGACTTCAAGGTCTCTGAGGTGTCCAAAGACTACAGAAAGCTTGCATCTGAGTTCTCAAAATTGGGTCTTTTTGACACCAAAGGGCATGTCACTTCATGCACCCTTGCATCTGTTGCTGTTATGTTCCTCATTGTACTCTATGGTGTTCTGAGGTGCACTAGTGTGTGGGCTCATTTGGGTTCAGGCATGCTCTTAGGGTTGCTTTGGATGCAAAGTGCTTATGTGGGCCATGATTCTGGCCACTATGTGGTTATGACAACCAATGGTTTCAACAAGGTTGCACAGATCCTCTCTGGGAACTGCTTGACCGGGATAAGCATTGCTTGGTGGAAGTGGACTCACAATGCTCACCACATTGCGTGCAACAGCCTTGACCATGACCCTGATCTGCAGCACATGCCGGTCTTTGCAGTTTCGTCGCGGTTCTTCAATTCCATAACCTCTCATTTCTATGGGAGGAAGTTGGAGTTTGATTTCATTGCTAGGTTCTTGATCTGCTACCAGCACTTTACTTTTTACCCGGTAATGTGTGTTGCCAGGGTCAACTTGTATCTGCAGACAATTCTGCTATTGTTTTCGAGGCGAAAAGTGCAGGATAGAGCCTTGAACATAATGGGGATCCTTGTGTTTTGGACTTGGTTCCCTCTTTTAGTGTCTTGCCTGCCAAATTGGCCTGAGAGGGTTATGTTTGTGCTTGCTAGCTTTGCTGTTTGTTCCATCCAGCACATTCAGTTCTGTTTGAATCACTTTGCTGCAAATGTATATGTCGGGCCACCGAGTGGGAATGACTGGTTTGAGAAGCAGACAAGTGGTACATTGGATATCTCTTGTGCCTCTTCGATGGATTGGTTTTTCGGTGGCTTGCAGTTTCAGCTTGAGCATCATTTGTTTCCAAGGCTACCTCGGTGCCAATTGAGGAAGATTTCGCCTTTGGTTAGTGACCTTTGCAAGAAGCATAATTTGCCTTATAGGAGCTTGTCATTTTGGGAGGCCAATCAGTGGACAATTAGGACCCTCAGGACTGCTGCCCTACAAGCTAGGGACTTAACAAACCCTGCCCCTAAGAATTTGTTGTGGGAAGCTGTTAATACCCATGGCTGA

>Glyma01g05470.2   sequence type=CDS   gene model=Glyma01g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGTTGAGAAGGAGAAGAAGTACATAACCTCAGAGGAGCTGAAGGGTCACAACAAGGAGGGAGATTTATGGATCTCAATTCAAGGTAAGGTGTACAATGTCTCAGATTGGGTCAAGGAGCACCCTGGTGGTGATGTTCCAATCTCAAACCTTGCTGGCCAGGATGTCACTGATGCATTCATAGCATACCATCCTGGCACAGCATGGTCACACCTTGAAAAATTCTTCACTGGCTACCACCTCAGTGACTTCAAGGTCTCTGAGGTGTCCAAAGACTACAGAAAGCTTGCATCTGAGTTCTCAAAATTGGGTCTTTTTGACACCAAAGGGCATGTCACTTCATGCACCCTTGCATCTGTTGCTGTTATGTTCCTCATTGTACTCTATGGTGTTCTGAGGTGCACTAGTGTGTGGGCTCATTTGGGTTCAGGCATGCTCTTAGGGTTGCTTTGGATGCAAAGTGCTTATGTGGGCCATGATTCTGGCCACTATGTGGTTATGACAACCAATGGTTTCAACAAGGTTGCACAGATCCTCTCTGGGAACTGCTTGACCGGGATAAGCATTGCTTGGTGGAAGTGGACTCACAATGCTCACCACATTGCGTGCAACAGCCTTGACCATGACCCTGATCTGCAGCACATGCCGGTCTTTGCAGTTTCGTCGCGGTTCTTCAATTCCATAACCTCTCATTTCTATGGGAGGAAGTTGGAGTTTGATTTCATTGCTAGGTTCTTGATCTGCTACCAGCACTTTACTTTTTACCCGGTAATGTGTGTTGCCAGGGTCAACTTGTATCTGCAGACAATTCTGCTATTGTTTTCGAGGCGAAAAGTGCAGGATAGAGCCTTGAACATAATGGGGATCCTTGTGTTTTGGACTTGGTTCCCTCTTTTAGTGTCTTGCCTGCCAAATTGGCCTGAGAGGGTTATGTTTGTGCTTGCTAGCTTTGCTGTTTGTTCCATCCAGCACATTCAGTTCTGTTTGAATCACTTTGCTGCAAATGTATATGTCGGGCCACCGAGTGGGAATGACTGGTTTGAGAAGCAGACAAGTGGTACATTGGATATCTCTTGTGCCTCTTCGATGGATTGGTTTTTCGGTGGCTTGCAGTTTCAGCTTGAGCATCATTTGTTTCCAAGGCTACCTCGGTGCCAATTGAGGAAGATTTCGCCTTTGGTTAGTGACCTTTGCAAGAAGCATAATTTGCCTTATAGGAGCTTGTCATTTTGGGAGGCCAATCAGTGGACAATTAGGACCCTCAGGACTGCTGCCCTACAAGCTAGGGACTTAACAAACCCTGCCCCTAAGAATTTGTTGTGGGAAGCTGTTAATACCCATGGCTGA

Predicted protein sequences of Glyma01g05470

Limit To All Plant Sequences

>Glyma01g05470.1   sequence type=predicted peptide   gene model=Glyma01g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVVEKEKKYITSEELKGHNKEGDLWISIQGKVYNVSDWVKEHPGGDVPISNLAGQDVTDAFIAYHPGTAWSHLEKFFTGYHLSDFKVSEVSKDYRKLASEFSKLGLFDTKGHVTSCTLASVAVMFLIVLYGVLRCTSVWAHLGSGMLLGLLWMQSAYVGHDSGHYVVMTTNGFNKVAQILSGNCLTGISIAWWKWTHNAHHIACNSLDHDPDLQHMPVFAVSSRFFNSITSHFYGRKLEFDFIARFLICYQHFTFYPVMCVARVNLYLQTILLLFSRRKVQDRALNIMGILVFWTWFPLLVSCLPNWPERVMFVLASFAVCSIQHIQFCLNHFAANVYVGPPSGNDWFEKQTSGTLDISCASSMDWFFGGLQFQLEHHLFPRLPRCQLRKISPLVSDLCKKHNLPYRSLSFWEANQWTIRTLRTAALQARDLTNPAPKNLLWEAVNTHG*

>Glyma01g05470.2   sequence type=predicted peptide   gene model=Glyma01g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVVEKEKKYITSEELKGHNKEGDLWISIQGKVYNVSDWVKEHPGGDVPISNLAGQDVTDAFIAYHPGTAWSHLEKFFTGYHLSDFKVSEVSKDYRKLASEFSKLGLFDTKGHVTSCTLASVAVMFLIVLYGVLRCTSVWAHLGSGMLLGLLWMQSAYVGHDSGHYVVMTTNGFNKVAQILSGNCLTGISIAWWKWTHNAHHIACNSLDHDPDLQHMPVFAVSSRFFNSITSHFYGRKLEFDFIARFLICYQHFTFYPVMCVARVNLYLQTILLLFSRRKVQDRALNIMGILVFWTWFPLLVSCLPNWPERVMFVLASFAVCSIQHIQFCLNHFAANVYVGPPSGNDWFEKQTSGTLDISCASSMDWFFGGLQFQLEHHLFPRLPRCQLRKISPLVSDLCKKHNLPYRSLSFWEANQWTIRTLRTAALQARDLTNPAPKNLLWEAVNTHG*

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