Glyma01g05430 - SoyBase

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Report for Sequence Feature Glyma01g05430

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5252558
stop:	5258022
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g05430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69680	AT	Annotation by Michelle Graham. TAIR10: Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein \| chr1:26205148-26206568 FORWARD LENGTH=202	SoyBase	E_val: 6.00E-102	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3329	KOG	RAN guanine nucleotide release factor	JGI		ISS
PTHR15837	Panther	FAMILY NOT NAMED	JGI		ISS
PF04603	PFAM	Ran-interacting Mog1 protein	JGI		ISS
UniRef100_C6THV2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6THV2_SOYBN	SoyBase	E_val: 1.00E-142	ISS
UniRef100_G7KCJ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ran guanine nucleotide release factor n=1 Tax=Medicago truncatula RepID=G7KCJ8_MEDTR	SoyBase	E_val: 3.00E-123	ISS

Expression Patterns of Glyma01g05430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g05430 not represented in the dataset	Glyma01g05430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g05430

Paralog	Evidence	Comments
Glyma02g11790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g05430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g045700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g05430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g05430

Limit To All Plant Sequences

>Glyma01g05430.1   sequence type=CDS   gene model=Glyma01g05430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAAGATATTGTTTACCAACACCCTTTGTTTGGTGGCAAGATATCTAGCACATTCCCCCACAGATTCCAGGATGTCAGCAGCATTCGACAAGTCCCTGATCATCAGGAGGTGTTTGCGGACCCGAGCCGTGATGAAAGCTTGATCTTTGAGCTTTTAGAATTCAAGCCTGATGTTGCTGATAATGGGAGTGCTGGGTGGTTTCTTCAAGACCTTGCTAGTGAACAGGATGCTGAAGGAAGTGTGGTTATTGAGCAGTCAGGAGTTCTTGAAGCACCTGGTTTGATGTACAACAATACGCCTGCAGTTGTAACAACTGCAGTGGGTCAAATGGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAGTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTCTCTGCATATGAGCCCATTGTTATAAACCCTTTGAGTGAAAGTGCAGACACAGTTGGTGCTGGTGTAGCTGTTCCAGCTGCTCAAGCCGGATGCATGCCCATGGATGAGGTCTTTAAACTTGCTGTTACAAGCTTCAGGGTTCATGACTGGGGTCTTTTTTGA

Predicted protein sequences of Glyma01g05430

Limit To All Plant Sequences

>Glyma01g05430.1   sequence type=predicted peptide   gene model=Glyma01g05430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEDIVYQHPLFGGKISSTFPHRFQDVSSIRQVPDHQEVFADPSRDESLIFELLEFKPDVADNGSAGWFLQDLASEQDAEGSVVIEQSGVLEAPGLMYNNTPAVVTTAVGQMAISKGRQGREAQNIVKVYLANLRLRGVDTDVLVSAYEPIVINPLSESADTVGAGVAVPAAQAGCMPMDEVFKLAVTSFRVHDWGLF*

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