SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02880 | AT | Annotation by Michelle Graham. TAIR10: mucin-related | chr2:841303-843151 FORWARD LENGTH=314 | SoyBase | E_val: 3.00E-113 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7KCI0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mucin-like protein n=1 Tax=Medicago truncatula RepID=G7KCI0_MEDTR | SoyBase | E_val: 4.00E-149 | ISS |
| UniRef100_UPI00023372FF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023372FF related cluster n=1 Tax=unknown RepID=UPI00023372FF | SoyBase | E_val: 0 | ISS |
|
Glyma01g05360 not represented in the dataset |
Glyma01g05360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g11760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g045300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g05360.2 sequence type=transcript gene model=Glyma01g05360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAAAATCTGCCCTTGGTTTTCTAGAGAGAGAGAGAGAGAGAGAGAGCGCAAACTGAGAAACACCACACTGTTGCAGTTCCAATTTCTTCTCGGTAGCTCATAAAAAATGCAAGCGTTTCGACGAAGAATCACAACAACGACAATCTCCAAGGCGAAGCAATTCAGCGCTCTTCCGTACATTATCGCCGGCGAAGTTCCGGCGACTAGACGGTGGTGGTCGAGCCGCAAGTCCCGGAGCGGCGAGGACGAGTGGAACGAGGCGTGGGAGACGGCGTGGCTTCCGGACGACCTGACGCCGAAAACGCGTGCTCCGTGGGAGAGCGACGTCAACTTCCCTTCCTACTCCGCCCCTGCCGCCGAGGACGGCGACGAGGAGACGAAGGCATTCGTGGCGGAGATGAACGAGAATTGGAACGAGCGGCGGAAAGGATCGAAGGAGAAGGAGAAGAGAGAAGAGAACGGCGCGCTTTACAGCTTGGAGAATATGAAAAAGGATTACCGGTTGAAGAAGCAGAGGATGCACGCTGGCTTGTGGATGAAGGAGATTGAGAAGCTCGAGGAAGCGAAATTGGGCGATTCTGACATTGCTGGTGGTGATGACATTCAGAGATTGCTTGATAGTTGCTCCGACATTTTTGACCCTGGCAATAATAATCTCAACAATGCGCATGTTCAAACTTCTGATTTCAAAAACATGCCTGATGGATGGGAAACAATATCAAAAAATCAAGAAGGAAATGTGTGGGAGATGTCCCAGAGAGAAGAAGATATACTTCTCCAGGAATTTGAACGACGTATTGCCTATAGCAAATTTCAGATTGCTAGTTTTATCAAGACTCATATATTTAGCCGGAGGAGGCCAATTGATGGGTGGAAATATATGATTGAGTTGGTGGGACCAAATGCTAAGAGAGGGAAGGGTAGTGTTTCTAGAGTACCAAGTCTATCCGATCCCTCTACCCAACCATTTAAGGAGGAGAAAAATTCAGTTGATAAGACTTATGTACCCCGTGAGAGAAGGTAGCTTGGTCATGTGGTGTTGTGTAATCACTTTTATTGTGCAGAGGTCGTTTGATTCAAAAACCCTGCATGAAGGATAAAGCAAGTGACAATATGACCTAGGATGAATGTGATATTAATTGGTGGTCTAAAAGCAAAAGGAATTTTCTCATTTGCGATGTTAGAAGTTACTTCAAATGTGGAGTAATTAAACGCAGATGTACACGAAGATATTAAACAGGGGATCGCAAATTTTATCAGATGTTTTATTTTCTTGTCCTAATCAAGCGAAGAATGCACGAGAGGTTTCATCATGAATTGTGGATGCATCAAAATATAAACATGGCTGATGGCGTATATTATATTCATTGAACTTACAGAACTAGAAAATAATTGATGCCCTCTGCCTGTTAAAACATTGTAAACAATTAATCTCATCAGACTGATGTGTCTACACATAGTATCATATACGTAGTGGCATGCGATAGCTTTCTTTTTGTGTGCATGACTCTGAGTGCATTTCAATGAGAGGGGAAATAGATGAGTAGAAACCTGCATTTTAGCAGAAAGCTTCTGACTGAGAATCGAAATTGGAATCGATATTACGGTTAACGTTTAGACCAAAGCTTATTTTGTTTCTGGCATTGTTGTTTTTGATGCAACCAGGCTTATAGCGTGGTTTTATCTTCATGTGTTAATGTGTGTCCTACTTCTACTTGTCTGTTAAAGAAAAAAA
>Glyma01g05360.1 sequence type=CDS gene model=Glyma01g05360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCGTTTCGACGAAGAATCACAACAACGACAATCTCCAAGGCGAAGCAATTCAGCGCTCTTCCGTACATTATCGCCGGCGAAGTTCCGGCGACTAGACGGTGGTGGTCGAGCCGCAAGTCCCGGAGCGGCGAGGACGAGTGGAACGAGGCGTGGGAGACGGCGTGGCTTCCGGACGACCTGACGCCGAAAACGCGTGCTCCGTGGGAGAGCGACGTCAACTTCCCTTCCTACTCCGCCCCTGCCGCCGAGGACGGCGACGAGGAGACGAAGGCATTCGTGGCGGAGATGAACGAGAATTGGAACGAGCGGCGGAAAGGATCGAAGGAGAAGGAGAAGAGAGAAGAGAACGGCGCGCTTTACAGCTTGGAGAATATGAAAAAGGATTACCGGTTGAAGAAGCAGAGGATGCACGCTGGCTTGTGGATGAAGGAGATTGAGAAGCTCGAGGAAGCGAAATTGGGCGATTCTGACATTGCTGGTGGTGATGACATTCAGAGATTGCTTGATAGTTGCTCCGACATTTTTGACCCTGGCAATAATAATCTCAACAATGCGCATGTTCAAACTTCTGATTTCAAAAACATGCCTGATGGATGGGAAACAATATCAAAAAATCAAGAAGGAAATGTGTGGGAGATGTCCCAGAGAGAAGAAGATATACTTCTCCAGGAATTTGAACGACGTATTGCCTATAGCAAATTTCAGGTGTGTATAAAAATAATAGATTGA >Glyma01g05360.2 sequence type=CDS gene model=Glyma01g05360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCGTTTCGACGAAGAATCACAACAACGACAATCTCCAAGGCGAAGCAATTCAGCGCTCTTCCGTACATTATCGCCGGCGAAGTTCCGGCGACTAGACGGTGGTGGTCGAGCCGCAAGTCCCGGAGCGGCGAGGACGAGTGGAACGAGGCGTGGGAGACGGCGTGGCTTCCGGACGACCTGACGCCGAAAACGCGTGCTCCGTGGGAGAGCGACGTCAACTTCCCTTCCTACTCCGCCCCTGCCGCCGAGGACGGCGACGAGGAGACGAAGGCATTCGTGGCGGAGATGAACGAGAATTGGAACGAGCGGCGGAAAGGATCGAAGGAGAAGGAGAAGAGAGAAGAGAACGGCGCGCTTTACAGCTTGGAGAATATGAAAAAGGATTACCGGTTGAAGAAGCAGAGGATGCACGCTGGCTTGTGGATGAAGGAGATTGAGAAGCTCGAGGAAGCGAAATTGGGCGATTCTGACATTGCTGGTGGTGATGACATTCAGAGATTGCTTGATAGTTGCTCCGACATTTTTGACCCTGGCAATAATAATCTCAACAATGCGCATGTTCAAACTTCTGATTTCAAAAACATGCCTGATGGATGGGAAACAATATCAAAAAATCAAGAAGGAAATGTGTGGGAGATGTCCCAGAGAGAAGAAGATATACTTCTCCAGGAATTTGAACGACGTATTGCCTATAGCAAATTTCAGATTGCTAGTTTTATCAAGACTCATATATTTAGCCGGAGGAGGCCAATTGATGGGTGGAAATATATGATTGAGTTGGTGGGACCAAATGCTAAGAGAGGGAAGGGTAGTGTTTCTAGAGTACCAAGTCTATCCGATCCCTCTACCCAACCATTTAAGGAGGAGAAAAATTCAGTTGATAAGACTTATGTACCCCGTGAGAGAAGGTAG
>Glyma01g05360.1 sequence type=predicted peptide gene model=Glyma01g05360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQAFRRRITTTTISKAKQFSALPYIIAGEVPATRRWWSSRKSRSGEDEWNEAWETAWLPDDLTPKTRAPWESDVNFPSYSAPAAEDGDEETKAFVAEMNENWNERRKGSKEKEKREENGALYSLENMKKDYRLKKQRMHAGLWMKEIEKLEEAKLGDSDIAGGDDIQRLLDSCSDIFDPGNNNLNNAHVQTSDFKNMPDGWETISKNQEGNVWEMSQREEDILLQEFERRIAYSKFQVCIKIID* >Glyma01g05360.2 sequence type=predicted peptide gene model=Glyma01g05360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQAFRRRITTTTISKAKQFSALPYIIAGEVPATRRWWSSRKSRSGEDEWNEAWETAWLPDDLTPKTRAPWESDVNFPSYSAPAAEDGDEETKAFVAEMNENWNERRKGSKEKEKREENGALYSLENMKKDYRLKKQRMHAGLWMKEIEKLEEAKLGDSDIAGGDDIQRLLDSCSDIFDPGNNNLNNAHVQTSDFKNMPDGWETISKNQEGNVWEMSQREEDILLQEFERRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIELVGPNAKRGKGSVSRVPSLSDPSTQPFKEEKNSVDKTYVPRERR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
