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Report for Sequence Feature Glyma01g05350

Feature Type:gene_model
Chromosome:Gm01
Start:5083981
stop:5085647
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g05350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69760AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26920.1); Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr1:26240094-26240627 REVERSE LENGTH=177 SoyBaseE_val: 7.00E-23ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1J5N7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5N7_SOYBN SoyBaseE_val: 6.00E-130ISS
UniRef100_Q3LVG1UniRef Annotation by Michelle Graham. Most informative UniRef hit: TO109-12 (Fragment) n=1 Tax=Taraxacum officinale RepID=Q3LVG1_TAROF SoyBaseE_val: 1.00E-12ISS

Expression Patterns of Glyma01g05350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g05350 not represented in the dataset
Glyma01g05350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g05350
ParalogEvidenceComments
Glyma02g11750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g05350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g045200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g05350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g05350
>Glyma01g05350.1   sequence type=CDS   gene model=Glyma01g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAACTTTGGTGCCAAAGAGGCCTAGAGAAGAAGCCCAAGTGGAAAGAGGCTTGGACTTTGAAGAAGATTACTCCTCCTCAAAGAGGCACAAGCCATACAACCACATCCTATCCCTTCTTGATTCGGAGGAAGAGGACTCAACACAAGACCTCTCCCCTCTCATGACAACCCTCCAACAAGAAATCACTTGTGCCTCGAAAAATACCCAAGATGCCCTTTTAGTGTGCCCAACTCAAGAAAATGACCAAAACACCCTCACGATCAGTAGTTTAGAGGACAATAATGCAACAACCTCACAAGTTTTGAAGGAAGAGGAAGAGAATGACAAGGAGAGGGTCATGAGACACCTCCTTCAAGCCTCTGATGATGAACTTGGGATTCCAAATAGTGGGGATGGGTTATGGGGTTTTGAAGATAATGAATTTACTAGCGGGGATGGATTTTCTTCTTTGTGTGACAAGATGTGGGAGCTTGAAGATGAGAGAGCTAACTACTATGATTTCTTGCAATCTGAACTCTTCCTAGGGGGGGGGGGAATATAA
Predicted protein sequences of Glyma01g05350
>Glyma01g05350.1   sequence type=predicted peptide   gene model=Glyma01g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETLVPKRPREEAQVERGLDFEEDYSSSKRHKPYNHILSLLDSEEEDSTQDLSPLMTTLQQEITCASKNTQDALLVCPTQENDQNTLTISSLEDNNATTSQVLKEEEENDKERVMRHLLQASDDELGIPNSGDGLWGFEDNEFTSGDGFSSLCDKMWELEDERANYYDFLQSELFLGGGGI*






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