Glyma01g05340 - SoyBase

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Report for Sequence Feature Glyma01g05340

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5037887
stop:	5042760
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g05340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02870	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr2:838378-839781 FORWARD LENGTH=467	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24413	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413:SF218	Panther		JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7KCH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein SKIP11 n=1 Tax=Medicago truncatula RepID=G7KCH5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J5N5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5N5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g05340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g05340 not represented in the dataset	Glyma01g05340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g05340

Paralog	Evidence	Comments
Glyma02g11740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g05340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g045100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g05340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g05340

Limit To All Plant Sequences

>Glyma01g05340.4   sequence type=transcript   gene model=Glyma01g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCAAGGGACCAACAGAGGCAACCAAGGACACTGTAGAGAGAGGAAAGTGGTTCTGTTCTTTCTGTGAGTAACATAACATGCAATAGATACTATTATGTATAGAGAGAGAACAGAAGAGTTGAAGAAAGATTGTTGTTCAGTTCGAAAAATTTGCCCATCAAGTACCCTTTTTCTGTTTTCATTTTTTGGTTGGTTTTGCTTCCTATCCAACCCTGTTGTGGCGTTCCTGGATCGTTCTTCTCTGTGGCGGAGACATGTTGGACGGTCGTTCCTGCGTTGTTCCGAGGATGTTTTCCGGCACTTGCCAGGCAGAGAACGATTGGTCTTACATGAAGTGCTTGCTGGAGTTGGACATCAAGAATGGCAAGCGCCCTATGGAGATTGATGATGTTGAGGAGGATGAGCCCCACCAGCCAAGGAAGTGTACTAAGAAGTTGGATTCTTGCCATAGAGTTGAAATGGCTCGAATTTCGTTTCAACGTCAATCTATTGAGGCCAAGGATTCTGTTGTTCCCCCTATGGATCAGGAGACCATTGAGCCACTGAGTGTTTGTCAAGGAGTTGTTGAAGAAGATGGAGCTTTGACCGACCAGCTATTGGATGAGAAAGAACAGGAGGTTGATGGTTATTTGATGGATTTTGGTGACCATCAATCTGATAAACAGCAGCAGGCTCAGACGGGGGATTCATCAGATTTCGGTGCTCAGCTATCTGATGAAGATCAATTGCAGCATGATGATGAGAATTTATTGAATTCGAGTGAGCAGCAATCCGAGGGGCAGCAGCAGCACCATGGTGGGGATTCTTCGGATTCCAGTTCTCTCTTGCCACGCATGAACCGGGACAGTTCAATCGCCTGTCTCAGCCGCTGTTCAAGGTCAGATTATGGTTCTCTCGCCTCGCTGAATAGGAGCTTCTGGAACATAATCCGAAGCGGTGAGCTCTATCAGTGGAGGAGACTGAATGGTATCATGGAACACTGGATTTATTTTTCCTGCGCCCTCCTCGAATGGGAGGCCTATGATCCGATTCGCCAGCGGTGGATGCATTTGCCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCAGATAAGGAATCTTTAGCTGTAGGTACTGAGCTGCTTGTGTTTGGGAGGGAGCTGAGATCCCATGTCACTTACAGATACAGTCTCTTGACAAACTCGTGGACGTCCGGAACAAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGCCTTGGTGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTTGACTCTGCTGAATTATATAATTCTGAGACTCAAACATGGGAAACACTCCCATGTATGAAAAAACCCAGGAAGATGTGCTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATAGGGGGGATTGGGGGGTGTGATTCTAAGCTCCTCACATGTGGAGAGGAGTACAATTTACAGACTAGGACATGGACCGAGATTCCGAGCATGTCCCCTGGACGGAGTAGTAGGGGTCCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTGGTTGCTGTTGTAAATGATGAATTGTATGCTGCTGATTATGCCGACATGGAGGTTAAGAAGTATGACAAGGAGAGAAAAGTGTGGTTAACCATTGGGAGACTGCCGGAACGAGCAGTGTCAATGAATGGCTGGGGTCTTGCATTCAGGGCATGTGGAGATAAGCTTATTGTCATTGGTGGACCTAGGACTCATGGCGAGGGCTTTATTGAACTCAATTCATGGGTGCCTAGTGAAGGACCTCCACGGTGGGATCTACTTGCTAGAAAACGTTCCGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGAAGCATTGAATTTTCAAAACACATTTTGATGCTTCGAGTCCAAGGAGTTGCACAACATTGATTGATCCATTGACACAGGATTCTTGCTAATTGGTACTTTGCCCCCCTTATTTCTTTCTGATATTTTTCTTTCAAAGGTTGGGGATGATGGGGACAAGATTCAGATATATTATTCAAGATTAGCTGAAAAGTTTTCTGGGGAGGAGCTCTTTTGTCCTTTTTTTTGTTTTTTTTTCTTCCTTTTATGTTTAAAATTTCAACCACTATTTTGTTACATTTAAATTGGCATCTTCCCCCATTTCCATTGACCTGAGATTTTTCAAACTTTGGTATCACGTAGCAAAGAAATAGATTAAATAATTGAAGTTCCATACAAACTTAGGTTACTGGTGTTGTTTGTTTAAGTGCTTCTAAGAACACAACTGGATACTTGCTTTTCATGACAAATTACCGAGCTCGAAGGAATGAAATAATTTTGAGATTTTTTTCTTCCTTTTTTGAATTCTGTATTGATTCAATTTTCCATTTGAATTCATGGACTTTGTATCTTGAGCTCTCTCTGGTCTGGAAACTGGTATATATGACCATTCCATTTATTACTTACAGCAGATTGTTATCATTAATAGAATTTGTCTATCTCCTTTTTTTAATGGTGGGCCTGTGCATTATGATGCAAACTCATGGATGCCAAAACTAAAATAGAGGAAAATTTTCCATTTTTACTTTGTGCAAACCTTATGGAAAAATTAGTTTGCTTTTTCTGTCAAAATAATAAATACTGATTAATTGTTTGTTGTTTTAAAAATCATCATTGAACTTGTGGTTAATAGAGTTGTTTAATTTGTGTGGTTAAGAGCTAAATGCTTGACAGTTGAAAATATAGATCAACGATCTTTATTGTTAGGCATTGATGGAATGTTGTATCGCATCATTGAGCCATTGTTACTATGTTGATTGGAAGCCATCCAGAAGTTTTTTGTTGTGTTAGCAATTGCATGTTGGCCTTTATTTTCAAGCGTCTTATACATGCAGATGCAGTTGAAAACTTGAAATTGAGATATGCTTACATCTAATTTGTCTTGAAGACTTGAACTTATTGTAGCTATTGGATCTTTCTAATTGTAAGTACGTGACAATGGTCAAAGATTATGGTGGGAAATCTTGGACCTGGAACAGCAGAGTTGCTTTAAATATTTTGTTGGGTTGTTGCATAACCATTATTAGGTCAAACATGTTTGGATAAACTTCTCAATAAGCTAGCAAGAGGAAAAATAACAAGAAGGTAAAATAAATTAAGCTTTTATAAAAGTTGAAGAGGGTAAGATTGTTTAAAACTTATTGATGAAACTTGAACTATTTTATCTTATTTTCTTCTCTTACAAGTGTTTTTTAAAGAAATTTATTCAAATAGGATTTTAGTCTATTACTCTCGACAATTCACAATTGTTATTAGTAGAAGTCAAAAGCATTAGCTGACTAAAGTATGCCATACAGTGAAAACATGTGAAACAGAAGCAAATTCTGGGCATGATGCACATATCTAAGAACATGAAGATTGTACCACGTTAATCATGTCAACAAGTATCTCAAGGGCATTTATTAAGAAATTAGAAGGAAAAAAAAGGAAGCATTTTAATTAAGAATCACGTATGTGGCACACTGCCTGTGTTGCTATGGCATGTCAAGCTGATAGGCATCTACTCAGAATCACGTTTAAATTATTGATGATATATAGTGTCACGATGATAAAAATAAAAAAGGTTATTTTAACTAAGTGTAGAAGAATTTTTTTTGGAAGGGATTTTTATTTTCGACGTCTAAACAAGCAGGTGAAAAGACTTAACTTGAGAAGATTATAGGATATGTAAAGCTGTAAAGAAAAAATGGAATGGCATTTTAAAAAGATTATGAGAAGTCACGGTTGTTAGATAACTTCTTTGAAGATAGTACAAGATTGAGAAGTCTTAGGTATCTGAAGATCGAATTGAGGTAAAAACCAAAGTGGAATCCCTTCCAGGTTTTAACTAAATTCAATAGTAATCACTTCCAGGTTGAAAAGAAGAAAGTAGAAGAGATGCATGTTCAACATTATTAAAAGATAGTTTTTTTGTTGTTAGTGTAAATTGTAATTGTTGCATATTTACCTTTATTAGAGT

Coding sequences of Glyma01g05340

Limit To All Plant Sequences

>Glyma01g05340.3   sequence type=CDS   gene model=Glyma01g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGACGGTCGTTCCTGCGTTGTTCCGAGGATGTTTTCCGGCACTTGCCAGGCAGAGAACGATTGGTCTTACATGAAGTGCTTGCTGGAGTTGGACATCAAGAATGGCAAGCGCCCTATGGAGATTGATGATGTTGAGGAGGATGAGCCCCACCAGCCAAGGAAGTGTACTAAGAAGTTGGATTCTTGCCATAGAGTTGAAATGGCTCGAATTTCGTTTCAACGTCAATCTATTGAGGCCAAGGATTCTGTTGTTCCCCCTATGGATCAGGAGACCATTGAGCCACTGAGTGTTTGTCAAGGAGTTGTTGAAGAAGATGGAGCTTTGACCGACCAGCTATTGGATGAGAAAGAACAGGAGGTTGATGGTTATTTGATGGATTTTGGTGACCATCAATCTGATAAACAGCAGCAGGCTCAGACGGGGGATTCATCAGATTTCGGTGCTCAGCTATCTGATGAAGATCAATTGCAGCATGATGATGAGAATTTATTGAATTCGAGTGAGCAGCAATCCGAGGGGCAGCAGCAGCACCATGGTGGGGATTCTTCGGATTCCAGTTCTCTCTTGCCACGCATGAACCGGGACAGTTCAATCGCCTGTCTCAGCCGCTGTTCAAGGTCAGATTATGGTTCTCTCGCCTCGCTGAATAGGAGCTTCTGGAACATAATCCGAAGCGGTGAGCTCTATCAGTGGAGGAGACTGAATGGTATCATGGAACACTGGATTTATTTTTCCTGCGCCCTCCTCGAATGGGAGGCCTATGATCCGATTCGCCAGCGGTGGATGCATTTGCCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCAGATAAGGAATCTTTAGCTGTAGGTACTGAGCTGCTTGTGTTTGGGAGGGAGCTGAGATCCCATGTCACTTACAGATACAGTCTCTTGACAAACTCGTGGACGTCCGGAACAAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGCCTTGGTGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTTGACTCTGCTGAATTATATAATTCTGAGACTCAAACATGGGAAACACTCCCATGTATGAAAAAACCCAGGAAGATGTGCTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATAGGGGGGATTGGGGGGTGTGATTCTAAGCTCCTCACATGTGGAGAGGAGTACAATTTACAGACTAGGACATGGACCGAGATTCCGAGCATGTCCCCTGGACGGAGTAGTAGGGGTCCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTGGTTGCTGTTGTAAATGATGAATTGTATGCTGCTGATTATGCCGACATGGAGGTTAAGAAGTATGACAAGGAGAGAAAAGTGTGGTTAACCATTGGGAGACTGCCGGAACGAGCAGTGTCAATGAATGGCTGGGGTCTTGCATTCAGGGCATGTGGAGATAAGCTTATTGTCATTGGTGGACCTAGGACTCATGGCGAGGGCTTTATTGAACTCAATTCATGGGTGCCTAGTGAAGGACCTCCACGGTGGGATCTACTTGCTAGAAAACGTTCCGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA

>Glyma01g05340.4   sequence type=CDS   gene model=Glyma01g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGACGGTCGTTCCTGCGTTGTTCCGAGGATGTTTTCCGGCACTTGCCAGGCAGAGAACGATTGGTCTTACATGAAGTGCTTGCTGGAGTTGGACATCAAGAATGGCAAGCGCCCTATGGAGATTGATGATGTTGAGGAGGATGAGCCCCACCAGCCAAGGAAGTGTACTAAGAAGTTGGATTCTTGCCATAGAGTTGAAATGGCTCGAATTTCGTTTCAACGTCAATCTATTGAGGCCAAGGATTCTGTTGTTCCCCCTATGGATCAGGAGACCATTGAGCCACTGAGTGTTTGTCAAGGAGTTGTTGAAGAAGATGGAGCTTTGACCGACCAGCTATTGGATGAGAAAGAACAGGAGGTTGATGGTTATTTGATGGATTTTGGTGACCATCAATCTGATAAACAGCAGCAGGCTCAGACGGGGGATTCATCAGATTTCGGTGCTCAGCTATCTGATGAAGATCAATTGCAGCATGATGATGAGAATTTATTGAATTCGAGTGAGCAGCAATCCGAGGGGCAGCAGCAGCACCATGGTGGGGATTCTTCGGATTCCAGTTCTCTCTTGCCACGCATGAACCGGGACAGTTCAATCGCCTGTCTCAGCCGCTGTTCAAGGTCAGATTATGGTTCTCTCGCCTCGCTGAATAGGAGCTTCTGGAACATAATCCGAAGCGGTGAGCTCTATCAGTGGAGGAGACTGAATGGTATCATGGAACACTGGATTTATTTTTCCTGCGCCCTCCTCGAATGGGAGGCCTATGATCCGATTCGCCAGCGGTGGATGCATTTGCCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCAGATAAGGAATCTTTAGCTGTAGGTACTGAGCTGCTTGTGTTTGGGAGGGAGCTGAGATCCCATGTCACTTACAGATACAGTCTCTTGACAAACTCGTGGACGTCCGGAACAAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGCCTTGGTGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTTGACTCTGCTGAATTATATAATTCTGAGACTCAAACATGGGAAACACTCCCATGTATGAAAAAACCCAGGAAGATGTGCTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATAGGGGGGATTGGGGGGTGTGATTCTAAGCTCCTCACATGTGGAGAGGAGTACAATTTACAGACTAGGACATGGACCGAGATTCCGAGCATGTCCCCTGGACGGAGTAGTAGGGGTCCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTGGTTGCTGTTGTAAATGATGAATTGTATGCTGCTGATTATGCCGACATGGAGGTTAAGAAGTATGACAAGGAGAGAAAAGTGTGGTTAACCATTGGGAGACTGCCGGAACGAGCAGTGTCAATGAATGGCTGGGGTCTTGCATTCAGGGCATGTGGAGATAAGCTTATTGTCATTGGTGGACCTAGGACTCATGGCGAGGGCTTTATTGAACTCAATTCATGGGTGCCTAGTGAAGGACCTCCACGGTGGGATCTACTTGCTAGAAAACGTTCCGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA

Predicted protein sequences of Glyma01g05340

Limit To All Plant Sequences

>Glyma01g05340.3   sequence type=predicted peptide   gene model=Glyma01g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDGRSCVVPRMFSGTCQAENDWSYMKCLLELDIKNGKRPMEIDDVEEDEPHQPRKCTKKLDSCHRVEMARISFQRQSIEAKDSVVPPMDQETIEPLSVCQGVVEEDGALTDQLLDEKEQEVDGYLMDFGDHQSDKQQQAQTGDSSDFGAQLSDEDQLQHDDENLLNSSEQQSEGQQQHHGGDSSDSSSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFWNIIRSGELYQWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVTYRYSLLTNSWTSGTRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSETQTWETLPCMKKPRKMCSGVFMDGKFYVIGGIGGCDSKLLTCGEEYNLQTRTWTEIPSMSPGRSSRGPEMPATAEAPPLVAVVNDELYAADYADMEVKKYDKERKVWLTIGRLPERAVSMNGWGLAFRACGDKLIVIGGPRTHGEGFIELNSWVPSEGPPRWDLLARKRSGNFVYNCAVMGC*

>Glyma01g05340.4   sequence type=predicted peptide   gene model=Glyma01g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDGRSCVVPRMFSGTCQAENDWSYMKCLLELDIKNGKRPMEIDDVEEDEPHQPRKCTKKLDSCHRVEMARISFQRQSIEAKDSVVPPMDQETIEPLSVCQGVVEEDGALTDQLLDEKEQEVDGYLMDFGDHQSDKQQQAQTGDSSDFGAQLSDEDQLQHDDENLLNSSEQQSEGQQQHHGGDSSDSSSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFWNIIRSGELYQWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVTYRYSLLTNSWTSGTRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSETQTWETLPCMKKPRKMCSGVFMDGKFYVIGGIGGCDSKLLTCGEEYNLQTRTWTEIPSMSPGRSSRGPEMPATAEAPPLVAVVNDELYAADYADMEVKKYDKERKVWLTIGRLPERAVSMNGWGLAFRACGDKLIVIGGPRTHGEGFIELNSWVPSEGPPRWDLLARKRSGNFVYNCAVMGC*

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