SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26940 | AT | Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9343193-9344962 FORWARD LENGTH=226 | SoyBase | E_val: 2.00E-90 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| PTHR11071 | Panther | CYCLOPHILIN | JGI | ISS | |
| PTHR11071:SF17 | Panther | EMP24/GP25L-RELATED | JGI | ISS | |
| PF00160 | PFAM | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | JGI | ISS | |
| UniRef100_B7FMU5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase-like protein n=1 Tax=Medicago truncatula RepID=B7FMU5_MEDTR | SoyBase | E_val: 3.00E-95 | ISS |
| UniRef100_UPI0002337824 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337824 related cluster n=1 Tax=unknown RepID=UPI0002337824 | SoyBase | E_val: 2.00E-131 | ISS |
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Glyma01g05321 not represented in the dataset |
Glyma01g05321 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g11730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g044900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g05321.1 sequence type=CDS gene model=Glyma01g05321 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGATCCGAGGATTCAGTTTTTGGATCAAAGGTTGCTTTTTGCTGGCCTTGGTATCTATAATTTCCGGTCTGGAACCCGAACTAGGATTTACCCGCGTCGTCTTTCAGACAAAGTATGGAGATATTGAATTTGGTTTCTATCCAACCGTGGCATCCAAAACTGTTGACCACATTTTTAAGCTTGTGCGACTTGGAGGCTATAACACGAACCATTTCTTTCGGGTGGATAAGGGATTCGTGGCCCAAGTAGCAGATGTTGCAAATGAAAGATCGACTCCAGTGAACGAGGAACAAAGAAGGGAAGCTGTAAAGACTGTTGTTGGTGAATTTAGTGAAGTCAAACATGTTCGGGGTATTCTTTCCATGGGAAGATATGATGATCCGGACAGTGCTTCATCTTCATTTTCAATACTACTTGGAGATGCCCCTCATCTTGATGGCAAGCCGATGGAATGCATCACTATCCTGTCATCATATTACTATGACACGGAGACAGAAAATTGTGAGCAAGACAGATCAATTTTGAAGCTTAGACCAGCTGCCTCAGCTGTTGAAGTTGAAAGACAGATCTTATATTAA
>Glyma01g05321.1 sequence type=predicted peptide gene model=Glyma01g05321 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWIRGFSFWIKGCFLLALVSIISGLEPELGFTRVVFQTKYGDIEFGFYPTVASKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVANERSTPVNEEQRREAVKTVVGEFSEVKHVRGILSMGRYDDPDSASSSFSILLGDAPHLDGKPMECITILSSYYYDTETENCEQDRSILKLRPAASAVEVERQILY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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