SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14345 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:4899176-4899766 FORWARD LENGTH=196 | SoyBase | E_val: 9.00E-80 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| PTHR25005 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR25005:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_G7KB58 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Putativ eribonuclease P n=1 Tax=Medicago truncatula RepID=G7KB58_MEDTR | SoyBase | E_val: 2.00E-83 | ISS |
| UniRef100_I1J5M8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5M8_SOYBN | SoyBase | E_val: 2.00E-138 | ISS |
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Glyma01g05220 not represented in the dataset |
Glyma01g05220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g02300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g044500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g05220.1 sequence type=CDS gene model=Glyma01g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCCATTCCCCTCCTCTCACCACCCACCACCGCCACAAATTCCACCGTCAGCCACCAACCCTCCTCCACCTCCACCTCCTTCTCCCACAAATCCCACACCCTCCACCGCCGCCTCACGCGGCTCCATGTGTCCTCCCCCACCAACAACCCCCGCACCACCTCCACCACTCCCCCCACCACCACCACCACCACCTCCGGCGAGACCATATTCTTCGACGGCGGTGCCCACTACGGCGACCTCGCCGCGAACCTCCTCCTCGGATTCACCCTCCTCTGGCTCCCCCTCACCCTCGCCGCGGTGTCACGCGCCATGTTCCTGCGCTACAGGTTCACCAACCTCCGCGTCACCGTCATCTCGGGCCTCAGCGGCCAGGACCGCAGCGACTTCGCCTACTCCGTCATCAAGGACGTGCAGGTCGTGCCGCGTTTTATCGGAGAATGGGGTGACGTTGTCATAACGCTCAAGGATGGAACAAAGGTCGATCTCAGGAGTGTCCCCAAGTTCAGAGAAATCTCCAAGTATTGCCTCGCCATGGCTCAGAAACCCATCGTGTTGAACGAAAGTGGACCCAAAGGATTTTAG
>Glyma01g05220.1 sequence type=predicted peptide gene model=Glyma01g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASIPLLSPPTTATNSTVSHQPSSTSTSFSHKSHTLHRRLTRLHVSSPTNNPRTTSTTPPTTTTTTSGETIFFDGGAHYGDLAANLLLGFTLLWLPLTLAAVSRAMFLRYRFTNLRVTVISGLSGQDRSDFAYSVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREISKYCLAMAQKPIVLNESGPKGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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