Glyma01g05100 - SoyBase

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Report for Sequence Feature Glyma01g05100

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4750065
stop:	4755456
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g05100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14380	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 28 \| chr1:4918279-4920761 REVERSE LENGTH=602	SoyBase	E_val: 9.00E-76	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF189	Panther		JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7KB25	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KB25_MEDTR	SoyBase	E_val: 2.00E-150	ISS
UniRef100_UPI00023371F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023371F5 related cluster n=1 Tax=unknown RepID=UPI00023371F5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g05100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g05100

Paralog	Evidence	Comments
Glyma02g02370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g05100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g043800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g05100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g05100

Limit To All Plant Sequences

>Glyma01g05100.1   sequence type=CDS   gene model=Glyma01g05100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGTCAAAGTCTACTTCATCAAAGAAGAATGATATTTTTAAACCTTCTAGTGACAAGGATGCGCTGGTGTCGTCTGAGGTGCCCGTGTCTGATCCAACCGTTGATTCGTTGCAGATATCCGCACCAATATCTGGAGCTAATGATTCTAAAGGAGTGCTTTCCGAAAAGGAGGTAGTTAGTAGGTCATCACATGATAGGGATGTTCTTTCAACTGGAGTTGAAGAAGCTAAGGTGCAAGATGTTGCTAATTTTGGATCTCAAGAGGATCTTGAGAAACTCCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCTGCTTGTAGAAGCTATCTGGCTCGTCAAACATTTAAAAAACTCGAAGGTGTCATACAACTACAAGCTTTTATTCGTGGCCACTTGGTTCGAAGACAAGCTGTTTCTGCATTATATTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGGCTTGCAATCCAAAAAATTCGTAAGGATACCCATTGCTCAAATTCTGTTCGGGTAGCTTCATCCACACAGGCAGAGAAGCTGTCTGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCAACAGTGATCCTGGAGAACCTAACATGGTTCGGAAGTGGCTTGACTATTGGACAAGGTCACACTTTTGGGCACCTCTTCCTGAATTAGAAAAGAAACTTGGCTCAGCGTCTGATGAGAAAAATGGCAGTTCTCAGACAGTTCAAAAGGGGCAAATTAAAAAAATTACTCGGAAATATCCGGCTGTGAAAGCTAAGAATGGCTCAAATTTAGGTTCTAACAAATCTAAACAGTGTCCAAAAAAGGATTCAAGCCACCCATTGCCTTCAGCGCAGGAACACCCACAGAAAGAAACGGAGAAAAGTAGTTTTGAAAAGACTCACGCACATAATGTTTCAAATGGATCTGAGGTTGTTAGTGAAAAAAGGAAATCTGGCAATAAAAAGATTTTGGATCATGCTGTCACTGATGTTTCAGAGCAGGGCCCAAATGCCTCTTCAGAGAAAAAGAAAGATTTGACCGTGCCAAAGTCAAAAGAGTCTGATCCTGAGAAAGGTGATGGACAGGAAGCAAAAGACAAGAATGATAATGAGCTACATCGTTACCCTGTTGCCGTCTTAAAGACAACTGTGATGAAGGGTGAAAACGAAGGATATCAAGGAGTCAGTGAGAATTTGAATGGTGGTGACAATTGCATGAGTAACAATAGCCAAAGAAGAGCTTCATTACCTGCTAACTTTAATGATCAAGAGAATGAGTTATATAACACTCCTGTTACTCCAAGACTGCCAAGTTATATGGCTCCTACTGAATCAGCAAAAGCTAGGCTAAGAGGACAAGGCTCTCCAAGATTTGCTAATGATTTGGTAGACAAAAACAGTACAACCAGGCGGCATTCACTTTCATCTTCACTTAATGGCAGGTCAGGTTCATTTTCCCCAAGAGCTGAAAAGCTGATAGGCGTAAGCGGCAGAGGAGGGATAAAGTCTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA

Predicted protein sequences of Glyma01g05100

Limit To All Plant Sequences

>Glyma01g05100.1   sequence type=predicted peptide   gene model=Glyma01g05100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKGRSPGKWFKNLLLGKKSSSKSTSSKKNDIFKPSSDKDALVSSEVPVSDPTVDSLQISAPISGANDSKGVLSEKEVVSRSSHDRDVLSTGVEEAKVQDVANFGSQEDLEKLQLTEAAIKVQAACRSYLARQTFKKLEGVIQLQAFIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDIGLAIQKIRKDTHCSNSVRVASSTQAEKLSENVFVCKLLASSPYAVPLSLNSDPGEPNMVRKWLDYWTRSHFWAPLPELEKKLGSASDEKNGSSQTVQKGQIKKITRKYPAVKAKNGSNLGSNKSKQCPKKDSSHPLPSAQEHPQKETEKSSFEKTHAHNVSNGSEVVSEKRKSGNKKILDHAVTDVSEQGPNASSEKKKDLTVPKSKESDPEKGDGQEAKDKNDNELHRYPVAVLKTTVMKGENEGYQGVSENLNGGDNCMSNNSQRRASLPANFNDQENELYNTPVTPRLPSYMAPTESAKARLRGQGSPRFANDLVDKNSTTRRHSLSSSLNGRSGSFSPRAEKLIGVSGRGGIKSDRSLSSSRDGTEKLIQPQWRR*

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