Glyma01g05060 - SoyBase

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Report for Sequence Feature Glyma01g05060

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4706316
stop:	4710196
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g05060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69800	AT	Annotation by Michelle Graham. TAIR10: Cystathionine beta-synthase (CBS) protein \| chr1:26274416-26276105 REVERSE LENGTH=447	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
KOG1764	KOG	5'-AMP-activated protein kinase, gamma subunit	JGI		ISS
PTHR13780	Panther	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
UniRef100_B9S2A6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AMP-activated protein kinase, gamma regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9S2A6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1J5L8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5L8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g05060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g05060 not represented in the dataset	Glyma01g05060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g05060

Paralog	Evidence	Comments
Glyma02g02420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g05060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g043400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g05060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g05060

Limit To All Plant Sequences

>Glyma01g05060.3   sequence type=transcript   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTTTTCATGTATAGTTTCATGGTTCCAAATCAAATTCTGTTATTCATGCATCATAATTTCAAGCATTCCAGATATGGCGCAAGAACAAGAGTTCAGAACAAGCACCCCACTTCCAAAGTGTGATGCCTATTTCGAAACCATACAATCCAGAAAGAAGCTACCGCTGTCACTGCAGGAGACCTTGACAGATGCATTTGCAAAGATTCCTGTTTCTTCTTTTCCTGCAGTTCCTAGCGGAAAAGTAATTGAAATTCTAGCAGACACACCCGTTGGTGAAGCAGTTAAGATTCTATCTGAAAGCAACATTTTAGCAGCTCCAGTTAAAGACCCAGATGCATCTAATAGTTCAGATTGGAGAAGTAGGTATCTTGGCATCATAGATTATTCAGCCATCATTCTCTGGGTGCTGGAGGGTGCAGAACTTGCACAAGCTGCACTATTGGCAGGTACAGCAACAGCTGCTGGAGTTGGTGCAGGAGCTGCTGGTGCTTTGGGAGCACTAGCATTGGGACTGACAGGTCCTGCAGCAATTGCTGGGCTAACCACTGCTGCAGCAGGTGCTGCACTGGCAGGTGGTGTTGCTGCAGATAAAGTGATGGCTAAAGATGCACCTCAAGCTGCTGATAACCTGGGAGAGGACTTCTACAAAATAATACTGGAAGAAGAACCCTTCAAGTCAACAACGGTGCGATCAATAATTAAATCATACCGATGGGCACCTTTTGTTCCAGTTGCAAGAAACAGTGCTATGCTGACTGTCCTGCTGCTTCTCTCAAAGTATAGGCTGAGGAATGTGCCTGTGATAGAACCAGGTAGACCTGACATTGTAAATTTCATTACTCAATCAGCAGTTGTCCAAGGGCTCGAGGGATGCAAAGGAAGAGATTGGTTTGACTGCATTGCTGAAAAGTGTATATCTGATCTGGGACTTCCATTTATGTCTACCGATGAGGTTATTAGCATCCAGAGCAATGAATTGATTCTTGAAGCTTTCAAGCAGATGAAGGATAATCGAATTGGTGGTCTTCCTGTAATAGAGGGGCCAAAGAAGAGAATTGTTGGAAACTTGAGCATACGAGACATCAGACACTTGCTTCTAAGGCCAGAGCTTTTCACCAATTTTAGGAAGTTGACTGTGATGGATTTCATGAAGAAAATTGTCTCGTCATCCCTTCAAACTGGAAAAGTTACCCAACCCATAACATGCAAGCCTGACTCGACACTACAGGGGGTGATCCATACTCTTGCTTCTCAGTCTATTCACAGGATTTATGTGGTAGATGGACATGATGAAGTAGTTGGAGTCATTACACTAAGAGATGTGATCTCTTGTTTTGTCACCGAACCTCCTTACAATTTTGACGATTACTATGGATTTGCGGTGAAAGAGATGTTGAACCAGTGATTTTTATGGAAGTTTAAATAAAGGAAACACTCCAAATGTAAGAAACTCTT

>Glyma01g05060.4   sequence type=transcript   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTTTTCATGTATAGTTTCATGGTTCCAAATCAAATTCTGTTATTCATGCATCATAATTTCAAGCAATATGGCGCAAGAACAAGAGTTCAGAACAAGCACCCCACTTCCAAAGTGTGATGCCTATTTCGAAACCATACAATCCAGAAAGAAGCTACCGCTGTCACTGCAGGAGACCTTGACAGATGCATTTGCAAAGATTCCTGTTTCTTCTTTTCCTGCAGTTCCTAGCGGAAAAGTAATTGAAATTCTAGCAGACACACCCGTTGGTGAAGCAGTTAAGATTCTATCTGAAAGCAACATTTTAGCAGCTCCAGTTAAAGACCCAGATGCATCTAATAGTTCAGATTGGAGAAGTAGGTATCTTGGCATCATAGATTATTCAGCCATCATTCTCTGGGTGCTGGAGGGTGCAGAACTTGCACAAGCTGCACTATTGGCAGGTACAGCAACAGCTGCTGGAGTTGGTGCAGGAGCTGCTGGTGCTTTGGGAGCACTAGCATTGGGACTGACAGGTCCTGCAGCAATTGCTGGGCTAACCACTGCTGCAGCAGGTGCTGCACTGGCAGGTGGTGTTGCTGCAGATAAAGTGATGGCTAAAGATGCACCTCAAGCTGCTGATAACCTGGGAGAGGACTTCTACAAAATAATACTGGAAGAAGAACCCTTCAAGTCAACAACGGTGCGATCAATAATTAAATCATACCGATGGGCACCTTTTGTTCCAGTTGCAAGAAACAGTGCTATGCTGACTGTCCTGCTGCTTCTCTCAAAGTATAGGCTGAGGAATGTGCCTGTGATAGAACCAGGTAGACCTGACATTGTAAATTTCATTACTCAATCAGCAGTTGTCCAAGGGCTCGAGGGATGCAAAGGAAGAGATTGGTTTGACTGCATTGCTGAAAAGTGTATATCTGATCTGGGACTTCCATTTATGTCTACCGATGAGGTTATTAGCATCCAGAGCAATGAATTGATTCTTGAAGCTTTCAAGCAGATGAAGGATAATCGAATTGGTGGTCTTCCTGTAATAGAGGGGCCAAAGAAGAGAATTGTTGGAAACTTGAGCATACGAGACATCAGACACTTGCTTCTAAGGCCAGAGCTTTTCACCAATTTTAGGAAGTTGACTGTGATGGATTTCATGAAGAAAATTGTCTCGTCATCCCTTCAAACTGGAAAAGTTACCCAACCCATAACATGCAAGCCTGACTCGACACTACAGGGGGTGATCCATACTCTTGCTTCTCAGTCTATTCACAGGATTTATGTGGTAGATGGACATGATGAAGTAGTTGGAGTCATTACACTAAGAGATGTGATCTCTTGTTTTGTCACCGAACCTCCTTACAATTTTGACGATTACTATGGATTTGCGGTGAAAGAGATGTTGAACCAGTGATTTTTATGGAAGTTTAAATAAAGGAAACACTCCAAATGTAAGAAACTCTT

Coding sequences of Glyma01g05060

Limit To All Plant Sequences

>Glyma01g05060.2   sequence type=CDS   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAAGAACAAGAGTTCAGAACAAGCACCCCACTTCCAAAGTGTGATGCCTATTTCGAAACCATACAATCCAGAAAGAAGCTACCGCTGTCACTGCAGGAGACCTTGACAGATGCATTTGCAAAGATTCCTGTTTCTTCTTTTCCTGCAGTTCCTAGCGGAAAAGTAATTGAAATTCTAGCAGACACACCCGTTGGTGAAGCAGTTAAGATTCTATCTGAAAGCAACATTTTAGCAGCTCCAGTTAAAGACCCAGATGCATCTAATAGTTCAGATTGGAGAAGTAGGTATCTTGGCATCATAGATTATTCAGCCATCATTCTCTGGGTGCTGGAGGGTGCAGAACTTGCACAAGCTGCACTATTGGCAGGTACAGCAACAGCTGCTGGAGTTGGTGCAGGAGCTGCTGGTGCTTTGGGAGCACTAGCATTGGGACTGACAGGTCCTGCAGCAATTGCTGGGCTAACCACTGCTGCAGCAGGTGCTGCACTGGCAGGTGGTGTTGCTGCAGATAAAGTGATGGCTAAAGATGCACCTCAAGCTGCTGATAACCTGGGAGAGGACTTCTACAAAATAATACTGGAAGAAGAACCCTTCAAGTCAACAACGGTGCGATCAATAATTAAATCATACCGATGGGCACCTTTTGTTCCAGTTGCAAGAAACAGTGCTATGCTGACTGTCCTGCTGCTTCTCTCAAAGTATAGGCTGAGGAATGTGCCTGTGATAGAACCAGGTAGACCTGACATTGTAAATTTCATTACTCAATCAGCAGTTGTCCAAGGGCTCGAGGGATGCAAAGGAAGAGATTGGTTTGACTGCATTGCTGAAAAGTGTATATCTGATCTGGGACTTCCATTTATGTCTACCGATGAGGTTATTAGCATCCAGAGCAATGAATTGATTCTTGAAGCTTTCAAGCAGATGAAGGATAATCGAATTGGTGGTCTTCCTGTAATAGAGGGGCCAAAGAAGAGAATTGTTGGAAACTTGAGCATACGAGACATCAGACACTTGCTTCTAAGGCCAGAGCTTTTCACCAATTTTAGGAAGTTGACTGTGATGGATTTCATGAAGAAAATTGTCTCGTCATCCCTTCAAACTGGAAAAGTTACCCAACCCATAACATGCAAGCCTGACTCGACACTACAGGGGGTGATCCATACTCTTGCTTCTCAGTCTATTCACAGGATTTATGTGGTAGATGGACATGATGAAGTAGTTGGAGTCATTACACTAAGAGATGTGATCTCTTGTTTTGTCACCGAACCTCCTTACAATTTTGACGATTACTATGGATTTGCGGTGAAAGAGATGTTGAACCAGTGA

>Glyma01g05060.3   sequence type=CDS   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAAGAACAAGAGTTCAGAACAAGCACCCCACTTCCAAAGTGTGATGCCTATTTCGAAACCATACAATCCAGAAAGAAGCTACCGCTGTCACTGCAGGAGACCTTGACAGATGCATTTGCAAAGATTCCTGTTTCTTCTTTTCCTGCAGTTCCTAGCGGAAAAGTAATTGAAATTCTAGCAGACACACCCGTTGGTGAAGCAGTTAAGATTCTATCTGAAAGCAACATTTTAGCAGCTCCAGTTAAAGACCCAGATGCATCTAATAGTTCAGATTGGAGAAGTAGGTATCTTGGCATCATAGATTATTCAGCCATCATTCTCTGGGTGCTGGAGGGTGCAGAACTTGCACAAGCTGCACTATTGGCAGGTACAGCAACAGCTGCTGGAGTTGGTGCAGGAGCTGCTGGTGCTTTGGGAGCACTAGCATTGGGACTGACAGGTCCTGCAGCAATTGCTGGGCTAACCACTGCTGCAGCAGGTGCTGCACTGGCAGGTGGTGTTGCTGCAGATAAAGTGATGGCTAAAGATGCACCTCAAGCTGCTGATAACCTGGGAGAGGACTTCTACAAAATAATACTGGAAGAAGAACCCTTCAAGTCAACAACGGTGCGATCAATAATTAAATCATACCGATGGGCACCTTTTGTTCCAGTTGCAAGAAACAGTGCTATGCTGACTGTCCTGCTGCTTCTCTCAAAGTATAGGCTGAGGAATGTGCCTGTGATAGAACCAGGTAGACCTGACATTGTAAATTTCATTACTCAATCAGCAGTTGTCCAAGGGCTCGAGGGATGCAAAGGAAGAGATTGGTTTGACTGCATTGCTGAAAAGTGTATATCTGATCTGGGACTTCCATTTATGTCTACCGATGAGGTTATTAGCATCCAGAGCAATGAATTGATTCTTGAAGCTTTCAAGCAGATGAAGGATAATCGAATTGGTGGTCTTCCTGTAATAGAGGGGCCAAAGAAGAGAATTGTTGGAAACTTGAGCATACGAGACATCAGACACTTGCTTCTAAGGCCAGAGCTTTTCACCAATTTTAGGAAGTTGACTGTGATGGATTTCATGAAGAAAATTGTCTCGTCATCCCTTCAAACTGGAAAAGTTACCCAACCCATAACATGCAAGCCTGACTCGACACTACAGGGGGTGATCCATACTCTTGCTTCTCAGTCTATTCACAGGATTTATGTGGTAGATGGACATGATGAAGTAGTTGGAGTCATTACACTAAGAGATGTGATCTCTTGTTTTGTCACCGAACCTCCTTACAATTTTGACGATTACTATGGATTTGCGGTGAAAGAGATGTTGAACCAGTGA

>Glyma01g05060.4   sequence type=CDS   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAAGAACAAGAGTTCAGAACAAGCACCCCACTTCCAAAGTGTGATGCCTATTTCGAAACCATACAATCCAGAAAGAAGCTACCGCTGTCACTGCAGGAGACCTTGACAGATGCATTTGCAAAGATTCCTGTTTCTTCTTTTCCTGCAGTTCCTAGCGGAAAAGTAATTGAAATTCTAGCAGACACACCCGTTGGTGAAGCAGTTAAGATTCTATCTGAAAGCAACATTTTAGCAGCTCCAGTTAAAGACCCAGATGCATCTAATAGTTCAGATTGGAGAAGTAGGTATCTTGGCATCATAGATTATTCAGCCATCATTCTCTGGGTGCTGGAGGGTGCAGAACTTGCACAAGCTGCACTATTGGCAGGTACAGCAACAGCTGCTGGAGTTGGTGCAGGAGCTGCTGGTGCTTTGGGAGCACTAGCATTGGGACTGACAGGTCCTGCAGCAATTGCTGGGCTAACCACTGCTGCAGCAGGTGCTGCACTGGCAGGTGGTGTTGCTGCAGATAAAGTGATGGCTAAAGATGCACCTCAAGCTGCTGATAACCTGGGAGAGGACTTCTACAAAATAATACTGGAAGAAGAACCCTTCAAGTCAACAACGGTGCGATCAATAATTAAATCATACCGATGGGCACCTTTTGTTCCAGTTGCAAGAAACAGTGCTATGCTGACTGTCCTGCTGCTTCTCTCAAAGTATAGGCTGAGGAATGTGCCTGTGATAGAACCAGGTAGACCTGACATTGTAAATTTCATTACTCAATCAGCAGTTGTCCAAGGGCTCGAGGGATGCAAAGGAAGAGATTGGTTTGACTGCATTGCTGAAAAGTGTATATCTGATCTGGGACTTCCATTTATGTCTACCGATGAGGTTATTAGCATCCAGAGCAATGAATTGATTCTTGAAGCTTTCAAGCAGATGAAGGATAATCGAATTGGTGGTCTTCCTGTAATAGAGGGGCCAAAGAAGAGAATTGTTGGAAACTTGAGCATACGAGACATCAGACACTTGCTTCTAAGGCCAGAGCTTTTCACCAATTTTAGGAAGTTGACTGTGATGGATTTCATGAAGAAAATTGTCTCGTCATCCCTTCAAACTGGAAAAGTTACCCAACCCATAACATGCAAGCCTGACTCGACACTACAGGGGGTGATCCATACTCTTGCTTCTCAGTCTATTCACAGGATTTATGTGGTAGATGGACATGATGAAGTAGTTGGAGTCATTACACTAAGAGATGTGATCTCTTGTTTTGTCACCGAACCTCCTTACAATTTTGACGATTACTATGGATTTGCGGTGAAAGAGATGTTGAACCAGTGA

Predicted protein sequences of Glyma01g05060

Limit To All Plant Sequences

>Glyma01g05060.2   sequence type=predicted peptide   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQEQEFRTSTPLPKCDAYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEILADTPVGEAVKILSESNILAAPVKDPDASNSSDWRSRYLGIIDYSAIILWVLEGAELAQAALLAGTATAAGVGAGAAGALGALALGLTGPAAIAGLTTAAAGAALAGGVAADKVMAKDAPQAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRNVPVIEPGRPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKCISDLGLPFMSTDEVISIQSNELILEAFKQMKDNRIGGLPVIEGPKKRIVGNLSIRDIRHLLLRPELFTNFRKLTVMDFMKKIVSSSLQTGKVTQPITCKPDSTLQGVIHTLASQSIHRIYVVDGHDEVVGVITLRDVISCFVTEPPYNFDDYYGFAVKEMLNQ*

>Glyma01g05060.3   sequence type=predicted peptide   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQEQEFRTSTPLPKCDAYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEILADTPVGEAVKILSESNILAAPVKDPDASNSSDWRSRYLGIIDYSAIILWVLEGAELAQAALLAGTATAAGVGAGAAGALGALALGLTGPAAIAGLTTAAAGAALAGGVAADKVMAKDAPQAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRNVPVIEPGRPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKCISDLGLPFMSTDEVISIQSNELILEAFKQMKDNRIGGLPVIEGPKKRIVGNLSIRDIRHLLLRPELFTNFRKLTVMDFMKKIVSSSLQTGKVTQPITCKPDSTLQGVIHTLASQSIHRIYVVDGHDEVVGVITLRDVISCFVTEPPYNFDDYYGFAVKEMLNQ*

>Glyma01g05060.4   sequence type=predicted peptide   gene model=Glyma01g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQEQEFRTSTPLPKCDAYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEILADTPVGEAVKILSESNILAAPVKDPDASNSSDWRSRYLGIIDYSAIILWVLEGAELAQAALLAGTATAAGVGAGAAGALGALALGLTGPAAIAGLTTAAAGAALAGGVAADKVMAKDAPQAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRNVPVIEPGRPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKCISDLGLPFMSTDEVISIQSNELILEAFKQMKDNRIGGLPVIEGPKKRIVGNLSIRDIRHLLLRPELFTNFRKLTVMDFMKKIVSSSLQTGKVTQPITCKPDSTLQGVIHTLASQSIHRIYVVDGHDEVVGVITLRDVISCFVTEPPYNFDDYYGFAVKEMLNQ*

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