Glyma01g04980 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g04980

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4649146
stop:	4655506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27000	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1664) \| chr1:9374068-9376422 FORWARD LENGTH=304	SoyBase	E_val: 2.00E-94	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF07889	PFAM	Protein of unknown function (DUF1664)	JGI		ISS
UniRef100_I1J5L0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5L0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GPG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP109 n=1 Tax=Glycine max RepID=Q0GPG4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04980

Paralog	Evidence	Comments
Glyma02g02481	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g042800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g04980

Limit To All Plant Sequences

>Glyma01g04980.2   sequence type=transcript   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGCGGTTCCCCGTTCGTGTTTGGGTTAGTAGTCAAAGTATTTGATAGTGCAACCCAACCTAACTAACGATTAACCAACCTGCATCACGCACGTCTCTCTCTCTCTCTCGCCATGGCTATGGCTATGCAAAGCGGAATCGGAGTCTCCAAGATCCTCATCATAGCAGGAGCAGGTTACACCGGCACCGTCCTCATCAAAAACGGAAAACTCTCGGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCTGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCCCTTGTCGTTCCAGCTGCTGCCTTGGGCGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTTATGTATGTGACTAGACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACCCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTAATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATAGGTTAGCTGAATTGAGTTCTAAGCAGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCCGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCAGAAACATTGTCTGGTTTAGACATGTCTGCTTCAGATAGTGTCATGCCAGATGGCGGGGATAAACGAGAGCAACAGCGAAGGCCATTGTTGAGGAAGGGCATTGCAAAAACATTGTCCAGTTTAGACAAATTTGCTTCAGATGGTATCATGCTAGATGGTGTGGATAAACTAGAGCAACAGTGAAGGCCATTGTTGAGGACTAGTTCAACCAACCGTTGATGACAAGGTCTTAAATCATGATTACCAACCTTTTAAGCGTTCGTTCCTCGTTTTTTTAGCAGTAACTTTCAGTTCACTTGTTCATAAATCAAAATATACTTGTGACAGCTATTGTGATTTTCACACTAAATTTTATCCTACATAGTATATTAATAGATTGGATACATTATATATTCAAGCTTGTGAATTGTGATTCTAAATTGTAAATAAAATTTTGCTGTCAAGGTGTATGTTGGTTTGGTGCTACCAGCTTATGCCCGATGCTTTTGGTTTGCTAGATTCATGACTTCTGTTGTATTTGTTTTACCAAAATTGTGATCGCCTCCCACTGTAATTTTTTTTATCGACAAATATTAGTTGTTAGATTGTTAATTTTGTTAATAGGATGATTCGAATCTACGATATTTTCCTCCTTTGTCTTTCACTATGAGGTGGATGTGGCATTATGAATTAT

>Glyma01g04980.3   sequence type=transcript   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGCGGTTCCCCGTTCGTGTTTGGGTTAGTAGTCAAAGTATTTGATAGTGCAACCCAACCTAACTAACGATTAACCAACCTGCATCACGCACGTCTCTCTCTCTCTCTCGCCATGGCTATGGCTATGCAAAGCGGAATCGGAGTCTCCAAGATCCTCATCATAGCAGGAGCAGGTTACACCGGCACCGTCCTCATCAAAAACGGAAAACTCTCGGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCTGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCCCTTGTCGTTCCAGCTGCTGCCTTGGGCGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTTATGTATGTGACTAGACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACCCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTAATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCCGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCAGAAACATTGTCTGGTTTAGACATGTCTGCTTCAGATAGTGTCATGCCAGATGGCGGGGATAAACGAGAGCAACAGCGAAGGCCATTGTTGAGGAAGGGCATTGCAAAAACATTGTCCAGTTTAGACAAATTTGCTTCAGATGGTATCATGCTAGATGGTGTGGATAAACTAGAGCAACAGTGAAGGCCATTGTTGAGGACTAGTTCAACCAACCGTTGATGACAAGGTCTTAAATCATGATTACCAACCTTTTAAGCGTTCGTTCCTCGTTTTTTTAGCAGTAACTTTCAGTTCACTTGTTCATAAATCAAAATATACTTGTGACAGCTATTGTGATTTTCACACTAAATTTTATCCTACATAGTATATTAATAGATTGGATACATTATATATTCAAGCTTGTGAATTGTGATTCTAAATTGTAAATAAAATTTTGCTGTCAAGGTGTATGTTGGTTTGGTGCTACCAGCTTATGCCCGATGCTTTTGGTTTGCTAGATTCATGACTTCTGTTGTATTTGTTTTACCAAAATTGTGATCGCCTCCCACTGTAATTTTTTTTATCGACAAATATTAGTTGTTAGATTGTTAATTTTGTTAATAGGATGATTCGAATCTACGATATTTTCCTCCTTTGTCTTTCACTATGAGGTGGATGTGGCATTATGAATTAT

Coding sequences of Glyma01g04980

Limit To All Plant Sequences

>Glyma01g04980.1   sequence type=CDS   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATGGCTATGCAAAGCGGAATCGGAGTCTCCAAGATCCTCATCATAGCAGGAGCAGGTTACACCGGCACCGTCCTCATCAAAAACGGAAAACTCTCGGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCTGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCCCTTGTCGTTCCAGCTGCTGCCTTGGGCGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTTATGTATGTGACTAGACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACCCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTAATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATAGGTTAGCTGAATTGAGTTCTAAGCAGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCCGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCAGAAACATTGTCTGGTTTAGACATGTCTGCTTCAGATAGTGTCATGCCAGATGGCGGGGATAAACGAGAGCAACAGCGAAGGCCATTGTTGAGGTTTGAATTAGCTCATTTTTGGTTCTTTGAATCTTTTCCCCTCTGTAGAAGAATGCATTGCATGCTGCACATTCTAAACTCAGATAAATTTTCGGGGCACTATATTTTTCTATAA

>Glyma01g04980.2   sequence type=CDS   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATGGCTATGCAAAGCGGAATCGGAGTCTCCAAGATCCTCATCATAGCAGGAGCAGGTTACACCGGCACCGTCCTCATCAAAAACGGAAAACTCTCGGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCTGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCCCTTGTCGTTCCAGCTGCTGCCTTGGGCGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTTATGTATGTGACTAGACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACCCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTAATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATAGGTTAGCTGAATTGAGTTCTAAGCAGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCCGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCAGAAACATTGTCTGGTTTAGACATGTCTGCTTCAGATAGTGTCATGCCAGATGGCGGGGATAAACGAGAGCAACAGCGAAGGCCATTGTTGAGGAAGGGCATTGCAAAAACATTGTCCAGTTTAGACAAATTTGCTTCAGATGGTATCATGCTAGATGGTGTGGATAAACTAGAGCAACAGTGA

>Glyma01g04980.3   sequence type=CDS   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATGGCTATGCAAAGCGGAATCGGAGTCTCCAAGATCCTCATCATAGCAGGAGCAGGTTACACCGGCACCGTCCTCATCAAAAACGGAAAACTCTCGGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCTGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCCCTTGTCGTTCCAGCTGCTGCCTTGGGCGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTTATGTATGTGACTAGACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACCCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTAATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCCGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCAGAAACATTGTCTGGTTTAGACATGTCTGCTTCAGATAGTGTCATGCCAGATGGCGGGGATAAACGAGAGCAACAGCGAAGGCCATTGTTGAGGAAGGGCATTGCAAAAACATTGTCCAGTTTAGACAAATTTGCTTCAGATGGTATCATGCTAGATGGTGTGGATAAACTAGAGCAACAGTGA

Predicted protein sequences of Glyma01g04980

Limit To All Plant Sequences

>Glyma01g04980.1   sequence type=predicted peptide   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAMQSGIGVSKILIIAGAGYTGTVLIKNGKLSDLIGELQLLVKGLEKSGEHAEGEGEYADAIAAQVRRLANEVRQLASNRPITVLNGGSEQSNLSSLVVPAAALGALGYGYMWWKGISFSDLMYVTRRNMEKAVADLTKKLQHASDVIADTKKHLTQRIQNLNDKMLKLNELQRSTKDEVAGVRSTITNIHEDLGYLQQTVETLDYRLAELSSKQDYANYGLSYLIDYVHGKSQKKPELLQEQLKLSGKSPNLITYKGTPNLMGLKDIAETLSGLDMSASDSVMPDGGDKREQQRRPLLRFELAHFWFFESFPLCRRMHCMLHILNSDKFSGHYIFL*

>Glyma01g04980.2   sequence type=predicted peptide   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAMQSGIGVSKILIIAGAGYTGTVLIKNGKLSDLIGELQLLVKGLEKSGEHAEGEGEYADAIAAQVRRLANEVRQLASNRPITVLNGGSEQSNLSSLVVPAAALGALGYGYMWWKGISFSDLMYVTRRNMEKAVADLTKKLQHASDVIADTKKHLTQRIQNLNDKMLKLNELQRSTKDEVAGVRSTITNIHEDLGYLQQTVETLDYRLAELSSKQDYANYGLSYLIDYVHGKSQKKPELLQEQLKLSGKSPNLITYKGTPNLMGLKDIAETLSGLDMSASDSVMPDGGDKREQQRRPLLRKGIAKTLSSLDKFASDGIMLDGVDKLEQQ*

>Glyma01g04980.3   sequence type=predicted peptide   gene model=Glyma01g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAMQSGIGVSKILIIAGAGYTGTVLIKNGKLSDLIGELQLLVKGLEKSGEHAEGEGEYADAIAAQVRRLANEVRQLASNRPITVLNGGSEQSNLSSLVVPAAALGALGYGYMWWKGISFSDLMYVTRRNMEKAVADLTKKLQHASDVIADTKKHLTQRIQNLNDKMLKLNELQRSTKDEVAGVRSTITNIHEDLGYLQQTVETLDYANYGLSYLIDYVHGKSQKKPELLQEQLKLSGKSPNLITYKGTPNLMGLKDIAETLSGLDMSASDSVMPDGGDKREQQRRPLLRKGIAKTLSSLDKFASDGIMLDGVDKLEQQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain