SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02710 | AT | Annotation by Michelle Graham. TAIR10: PAS/LOV protein B | chr2:758812-760608 REVERSE LENGTH=397 | SoyBase | E_val: 7.00E-149 | ISS |
| GO:0000160 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0023014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction by phosphorylation | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000155 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| PTHR23244 | Panther | KELCH REPEAT DOMAIN | JGI | ISS | |
| PTHR23244:SF1 | Panther | TWIN LOV PROTEIN 1 | JGI | ISS | |
| PF00989 | PFAM | PAS fold | JGI | ISS | |
| UniRef100_D0PPG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PAS/LOV protein 1 n=2 Tax=Glycine max RepID=D0PPG4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J5K5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5K5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g04920 not represented in the dataset |
Glyma01g04920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g02600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g042300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g04920.2 sequence type=transcript gene model=Glyma01g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAAAAAATGAAAGAAATTTATGTGACTCCGGTTCGCTGCGTAGGGAAATGGTTCCTTCCTTCCTCTTGTGGTAGTGTAACACTCCGTTGTCTTGTCCTCCGAGTTCCTCACTCATAATTAATTCCCCCTTTCATTTTCCTTCCAATTTTTCAAACACCAGTAAATGGCCACCCATCAATTCCACCCCCACAATTCCTTCTTCTTCTTCTTTCCACAACACTAAACGCCGTCGTTTTCATGACTCCATAATTCACCAGAAGCAGAACAAGAAGCAGCAGCAGCAGCAGCAGCAGCGCGAGTTCACATGGGATTGGGAACAACCGCGGCGAGAAGCAGAAGAAGAATCGTCATCGAAGAAGGTTCTATAAGAACAACACACACCGCCACCGCCACCAACGCCGATGCCGATGGAGCTGGAGCTAGGTTCAACAACTATCCAGCGATCCTTCAACACGCGCTACACGCGCCACGCGCGCGACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCTGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGGCCCGTGAAGTCCTGGGCCGACCCGCCGCCATCTTCCAGGGCCCGCGAACTTCGAGAAAATCCGTCATTGAAATTCGCGAGGCCGTTAGAGAGGAGCGAAACGCGCAGGTCGTTCTGCTCAACTACCGCAAAGACGGCACGCCGTTTTGGATGCTTTTTCGTGTTTGCCCCGTTTTCAGCAGCGACGGTGGCGCCGTCGTGCACTTTGTTGCCGTACAGGTGCCGCTTCAGAAAAAGGAAGGGTCTGGAGTGAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTATGCGCCGATTCGTTGGCGGAGATTGGTCGCGTTTGTTCATTAGAGCAAGTGCTGGAACCTGACGTTAGAGAATTGGAGAGAGAAGAGCCGTGTGAGGCAAGTGATGAGGAGAAGCGTAGTGCAGTTAATGCTATGGACAATATATTTTCTGTGCTAACCCATTATAGTGAGGCGACGGGCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCGACATTACATCTGATAAGGGAGAGCATTAAAACAGAACAACCCTGCACAGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGGCAGCTTAATGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGTGGGATCTTCCAAGTCGTAGCAAAAGGATCATGTGAGTGTGAGTTTGGAACATATAATATTGCCTACTTCTCAGAAGTCAGAAATATTAATCCATTCGGAAAAATGATCAATCTCAACCAGTGATTGTTGAGATGATAGAAAGGTAAAAGAATTAATTTGTCAAGAAAGAAAAAGAGAGTCCATATTGTCAATTGTAAGAAAGCATTCTCTGTTGGAAGTTTATAAATAAAATGTATTATATTTTCCGTAATGTAGCAATAAAAATTGACTTGTACTAATTTCGTCTTATCTTTTAATAGTTGCAAATTTGCAATGACTATGCTTTCCCCCCT
>Glyma01g04920.1 sequence type=CDS gene model=Glyma01g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGATGGAGCTGGAGCTAGGTTCAACAACTATCCAGCGATCCTTCAACACGCGCTACACGCGCCACGCGCGCGACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCTGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGGCCCGTGAAGTCCTGGGCCGACCCGCCGCCATCTTCCAGGGCCCGCGAACTTCGAGAAAATCCGTCATTGAAATTCGCGAGGCCGTTAGAGAGGAGCGAAACGCGCAGGTCGTTCTGCTCAACTACCGCAAAGACGGCACGCCGTTTTGGATGCTTTTTCGTGTTTGCCCCGTTTTCAGCAGCGACGGTGGCGCCGTCGTGCACTTTGTTGCCGTACAGGTGCCGCTTCAGAAAAAGGAAGGGTCTGGAGTGAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTATGCGCCGATTCGTTGGCGGAGATTGGTCGCGTTTGTTCATTAGAGCAAGTGCTGGAACCTGACGTTAGAGAATTGGAGAGAGAAGAGCCGTGTGAGGCAAGTGATGAGGAGAAGCGTAGTGCAGTTAATGCTATGGACAATATATTTTCTGTGCTAACCCATTATAGTGAGGCGACGGGCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCGACATTACATCTGATAAGGGAGAGCATTAAAACAGAACAACCCTGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGGCAGCTTAATGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGTGGGATCTTCCAAGTCGTAG >Glyma01g04920.2 sequence type=CDS gene model=Glyma01g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGATGGAGCTGGAGCTAGGTTCAACAACTATCCAGCGATCCTTCAACACGCGCTACACGCGCCACGCGCGCGACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCTGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGGCCCGTGAAGTCCTGGGCCGACCCGCCGCCATCTTCCAGGGCCCGCGAACTTCGAGAAAATCCGTCATTGAAATTCGCGAGGCCGTTAGAGAGGAGCGAAACGCGCAGGTCGTTCTGCTCAACTACCGCAAAGACGGCACGCCGTTTTGGATGCTTTTTCGTGTTTGCCCCGTTTTCAGCAGCGACGGTGGCGCCGTCGTGCACTTTGTTGCCGTACAGGTGCCGCTTCAGAAAAAGGAAGGGTCTGGAGTGAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTATGCGCCGATTCGTTGGCGGAGATTGGTCGCGTTTGTTCATTAGAGCAAGTGCTGGAACCTGACGTTAGAGAATTGGAGAGAGAAGAGCCGTGTGAGGCAAGTGATGAGGAGAAGCGTAGTGCAGTTAATGCTATGGACAATATATTTTCTGTGCTAACCCATTATAGTGAGGCGACGGGCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCGACATTACATCTGATAAGGGAGAGCATTAAAACAGAACAACCCTGCACAGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGA
>Glyma01g04920.1 sequence type=predicted peptide gene model=Glyma01g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPMELELGSTTIQRSFNTRYTRHARDSLDELPDSFTITDPSIPGHPIVFASPGFLKLTGYAAREVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSSDGGAVVHFVAVQVPLQKKEGSGVRDFGFGCCRKEVCADSLAEIGRVCSLEQVLEPDVRELEREEPCEASDEEKRSAVNAMDNIFSVLTHYSEATGRLVCQKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPRLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFVGVQIEDSNKNDDSHCLSPEKRQLNVVGVVKVAVRSLSMTVGSSKS* >Glyma01g04920.2 sequence type=predicted peptide gene model=Glyma01g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPMELELGSTTIQRSFNTRYTRHARDSLDELPDSFTITDPSIPGHPIVFASPGFLKLTGYAAREVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSSDGGAVVHFVAVQVPLQKKEGSGVRDFGFGCCRKEVCADSLAEIGRVCSLEQVLEPDVRELEREEPCEASDEEKRSAVNAMDNIFSVLTHYSEATGRLVCQKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPRLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGGTDTDTSTLHLIRESIKTEQPCTEGQKLILEFSSYLTRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
