Glyma01g04860 - SoyBase

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Report for Sequence Feature Glyma01g04860

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4462981
stop:	4468746
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27070	AT	Annotation by Michelle Graham. TAIR10: 5'-AMP-activated protein kinase-related \| chr1:9396945-9399225 REVERSE LENGTH=532	SoyBase	E_val: 8.00E-117	ISS
PTHR10343	Panther	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	JGI		ISS
PTHR10343:SF10	Panther	5-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	JGI		ISS
UniRef100_G7K9Q9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 5'-AMP-activated protein kinase subunit beta-2 n=1 Tax=Medicago truncatula RepID=G7K9Q9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023371E9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023371E9 related cluster n=1 Tax=unknown RepID=UPI00023371E9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g04860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04860

Paralog	Evidence	Comments
Glyma02g02660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g041500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g04860

Limit To All Plant Sequences

>Glyma01g04860.3   sequence type=transcript   gene model=Glyma01g04860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACATTCTTCTTCTAAAAAAGAAAACTAAAAATCATACATTATTTTCGTCTGGCGCATCAAACGTGAGTGCGTTGATACTAGCCCTCGCTTTCTTGGCGTAGGGTGAAGGGTCCATGCTGAAAATAAAACAAACGCCACGAACACGCTATCTCTGCGAGCAATTAGCAGTGTGCGTAATTACAAAGTGTGGATAACATAATTGTGATCATAATAACAAAAAGTAGTAACTCCCTTGAAGCATTGTTCGTTGCTTCCTTCGCGCTCTCACCCTTTTCCCCCTTCTTTGTTTTCTTCCATTCTTTCTTGCTCGCCAGCACCACTCCTTCTCTGTTTCTCTCTCGCCGAGTAACTGTTCGACGAAATGCCCCAACCATGCACTTCCTCACCGCACCCTCCTCCCTTTCGCTGCTCTCGCCCCATTTGACCCCTTCCCTCGTCCCCCCTCTCCACTTCCCCGCCTCGACCGGGGGGGTGCGCCGGCTCGCGGTTGAACCCGGTTCGGCTCTCCATTCTTCTCTTCTGAAGGTGAACCGCTACAAGGGTTTGTGGTTGTCCTGCACTGGGTTCTTGCGGCGGTGCAAGGGTTGGAACGGAGAGTTTTCATCTCTTGAGTCGGAGATTTTGGAGTTCATGCAGAGTACCGGTAAGCCCGAAGTGTTTCCGACCAAAGAAGAGTTGGTTGCTGCAGGGAGGGTGGATTTGGTCAACGCTATTGTCAATGAAGGAGGGTGGCTTGCGTATGGGTGGGATTTGAATGGCGGGTCCGGTGAAATTCGGGGTCTTGAAGATAATAGTAGCGGTGGAAATGGAATTGAGGGTAATGGGGCTCAGGCTTCTGGGGTTTCTTCTTCTTCTTCTCAATCAGATAATTCAGTGGACATTGAAGCTGGTGAATCTGGCATTGAGGGTATATTGAGTCGGTTGGAGAAACAAAGAAATAGATCTTTTGGACTTGACTTGGATAATATTTCTTTTGAAAATAATGAAGATAAAGATGAATGGGATCATAGAACTACAACGGATGCAGTAGCTACTGGCCTAGAAAATGGTAGCATAGCATCCTCATCAAGCTCTACAAGCAGTCATCTTAGTGGTTCTCAGATCAAACATGATCCATACGGATCTCAATTAGGTACTGAAAATTTAAGAAACTCGCTTAAGCCAGAGACGTGGAGGAGTTGGATTGTTCAGAGAACTGGTTTTCGGGATACAGATTTTGAAGATGCTGAAATTGTTCCCAGTGAAACTGAGAAAGGAGGCATGAGTGATGCTTCAGGACAACCAGATATCCTCAACAGAAGGGAGTTTTCTTCTGAACATATAAACAGAGAAACGGGTTTATATTCTCTTGATGGAAATACAAATCACAATGACATTAAATCCCGTATCCAGAATCTGGAATCGGAGCTATCTTCTATACTTCACTTGTTGAGGTCTAGCTCGGATAAAATTACAATGCAGATGGTGAGTGCAATAATTTAATAAGCTAATGATGATTAGACTTGTCTGTGAATTTTCCC

Coding sequences of Glyma01g04860

Limit To All Plant Sequences

>Glyma01g04860.2   sequence type=CDS   gene model=Glyma01g04860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACTTCCTCACCGCACCCTCCTCCCTTTCGCTGCTCTCGCCCCATTTGACCCCTTCCCTCGTCCCCCCTCTCCACTTCCCCGCCTCGACCGGGGGGGTGCGCCGGCTCGCGGTTGAACCCGGTTCGGCTCTCCATTCTTCTCTTCTGAAGGTGAACCGCTACAAGGGTTTGTGGTTGTCCTGCACTGGGTTCTTGCGGCGGTGCAAGGGTTGGAACGGAGAGTTTTCATCTCTTGAGTCGGAGATTTTGGAGTTCATGCAGAGTACCGGTAAGCCCGAAGTGTTTCCGACCAAAGAAGAGTTGGTTGCTGCAGGGAGGGTGGATTTGGTCAACGCTATTGTCAATGAAGGAGGGTGGCTTGCGTATGGGTGGGATTTGAATGGCGGGTCCGGTGAAATTCGGGGTCTTGAAGATAATAGTAGCGGTGGAAATGGAATTGAGGGTAATGGGGCTCAGGCTTCTGGGGTTTCTTCTTCTTCTTCTCAATCAGATAATTCAGTGGACATTGAAGCTGGTGAATCTGGCATTGAGGGTATATTGAGTCGGTTGGAGAAACAAAGAAATAGATCTTTTGGACTTGACTTGGATAATATTTCTTTTGAAAATAATGAAGATAAAGATGAATGGGATCATAGAACTACAACGGATGCAGTAGCTACTGGCCTAGAAAATGGTAGCATAGCATCCTCATCAAGCTCTACAAGCAGTCATCTTAGTGGTTCTCAGATCAAACATGATCCATACGGATCTCAATTAGGTACTGAAAATTTAAGAAACTCGCTTAAGCCAGAGACGTGGAGGAGTTGGATTGTTCAGAGAACTGGTTTTCGGGATACAGATTTTGAAGATGCTGAAATTGTTCCCAGTGAAACTGAGAAAGGAGGCATGAGTGATGCTTCAGGACAACCAGATATCCTCAACAGAAGGGAGTTTTCTTCTGAACATATAAACAGAGAAACGGGTTTATATTCTCTTGATGGAAATACAAATCACAATGACATTAAATCCCGTATCCAGAATCTGGAATCGGAGCTATCTTCTATACTTCACTTGTTGAGGTCTAGCTCGGATAAAATTACAATGCAGATGGTCCAGAAGAGCTCTTCTGATGGTCTAGCAAAGCTTTCTGATGCTTGGGAATTCCAGGAAAATGAGATCATGAATGCTCAGGGCAGATTGCGTTCTATACGGGCTAAGTTGTCAGTGTTAGAAGGAAAGATGGTGTTGGCAATAATGGATGCACATAAGGTAGTTGAAGAAAATCAGAAGAAGATTAATAATGCTCAAAAAGCTTTGCAAATTCTGAAGACTACTTGTGTAGTTTGGCCTAATAAGGCTTCAGAAGTTCTTTTAACTGGATCATTTGATGGTTGGTCCACCAAGAGAAAGATGGAGAGGTTAAGTCTCGGTGTATTTCTTTTGAACTTGCAGCTGTATCCTGGAAGATATGAGATGAAGTTCATTGTAGATGGAGAATGGAAAATTGATCCATTGCGCCCTGTTGTTACCAGCAATGGCTATGAGAATAATCTTCTCATCGTTCATGATTGA

>Glyma01g04860.3   sequence type=CDS   gene model=Glyma01g04860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACTTCCTCACCGCACCCTCCTCCCTTTCGCTGCTCTCGCCCCATTTGACCCCTTCCCTCGTCCCCCCTCTCCACTTCCCCGCCTCGACCGGGGGGGTGCGCCGGCTCGCGGTTGAACCCGGTTCGGCTCTCCATTCTTCTCTTCTGAAGGTGAACCGCTACAAGGGTTTGTGGTTGTCCTGCACTGGGTTCTTGCGGCGGTGCAAGGGTTGGAACGGAGAGTTTTCATCTCTTGAGTCGGAGATTTTGGAGTTCATGCAGAGTACCGGTAAGCCCGAAGTGTTTCCGACCAAAGAAGAGTTGGTTGCTGCAGGGAGGGTGGATTTGGTCAACGCTATTGTCAATGAAGGAGGGTGGCTTGCGTATGGGTGGGATTTGAATGGCGGGTCCGGTGAAATTCGGGGTCTTGAAGATAATAGTAGCGGTGGAAATGGAATTGAGGGTAATGGGGCTCAGGCTTCTGGGGTTTCTTCTTCTTCTTCTCAATCAGATAATTCAGTGGACATTGAAGCTGGTGAATCTGGCATTGAGGGTATATTGAGTCGGTTGGAGAAACAAAGAAATAGATCTTTTGGACTTGACTTGGATAATATTTCTTTTGAAAATAATGAAGATAAAGATGAATGGGATCATAGAACTACAACGGATGCAGTAGCTACTGGCCTAGAAAATGGTAGCATAGCATCCTCATCAAGCTCTACAAGCAGTCATCTTAGTGGTTCTCAGATCAAACATGATCCATACGGATCTCAATTAGGTACTGAAAATTTAAGAAACTCGCTTAAGCCAGAGACGTGGAGGAGTTGGATTGTTCAGAGAACTGGTTTTCGGGATACAGATTTTGAAGATGCTGAAATTGTTCCCAGTGAAACTGAGAAAGGAGGCATGAGTGATGCTTCAGGACAACCAGATATCCTCAACAGAAGGGAGTTTTCTTCTGAACATATAAACAGAGAAACGGGTTTATATTCTCTTGATGGAAATACAAATCACAATGACATTAAATCCCGTATCCAGAATCTGGAATCGGAGCTATCTTCTATACTTCACTTGTTGAGGTCTAGCTCGGATAAAATTACAATGCAGATGGTGAGTGCAATAATTTAA

Predicted protein sequences of Glyma01g04860

Limit To All Plant Sequences

>Glyma01g04860.2   sequence type=predicted peptide   gene model=Glyma01g04860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFLTAPSSLSLLSPHLTPSLVPPLHFPASTGGVRRLAVEPGSALHSSLLKVNRYKGLWLSCTGFLRRCKGWNGEFSSLESEILEFMQSTGKPEVFPTKEELVAAGRVDLVNAIVNEGGWLAYGWDLNGGSGEIRGLEDNSSGGNGIEGNGAQASGVSSSSSQSDNSVDIEAGESGIEGILSRLEKQRNRSFGLDLDNISFENNEDKDEWDHRTTTDAVATGLENGSIASSSSSTSSHLSGSQIKHDPYGSQLGTENLRNSLKPETWRSWIVQRTGFRDTDFEDAEIVPSETEKGGMSDASGQPDILNRREFSSEHINRETGLYSLDGNTNHNDIKSRIQNLESELSSILHLLRSSSDKITMQMVQKSSSDGLAKLSDAWEFQENEIMNAQGRLRSIRAKLSVLEGKMVLAIMDAHKVVEENQKKINNAQKALQILKTTCVVWPNKASEVLLTGSFDGWSTKRKMERLSLGVFLLNLQLYPGRYEMKFIVDGEWKIDPLRPVVTSNGYENNLLIVHD*

>Glyma01g04860.3   sequence type=predicted peptide   gene model=Glyma01g04860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFLTAPSSLSLLSPHLTPSLVPPLHFPASTGGVRRLAVEPGSALHSSLLKVNRYKGLWLSCTGFLRRCKGWNGEFSSLESEILEFMQSTGKPEVFPTKEELVAAGRVDLVNAIVNEGGWLAYGWDLNGGSGEIRGLEDNSSGGNGIEGNGAQASGVSSSSSQSDNSVDIEAGESGIEGILSRLEKQRNRSFGLDLDNISFENNEDKDEWDHRTTTDAVATGLENGSIASSSSSTSSHLSGSQIKHDPYGSQLGTENLRNSLKPETWRSWIVQRTGFRDTDFEDAEIVPSETEKGGMSDASGQPDILNRREFSSEHINRETGLYSLDGNTNHNDIKSRIQNLESELSSILHLLRSSSDKITMQMVSAII*

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