Glyma01g04820 - SoyBase

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Report for Sequence Feature Glyma01g04820

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4406614
stop:	4412858
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27090	AT	Annotation by Michelle Graham. TAIR10: glycine-rich protein \| chr1:9404041-9406098 REVERSE LENGTH=420	SoyBase	E_val: 2.00E-118	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1J5J5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5J5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6AVI7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AVI7_ORYSJ	SoyBase	E_val: 2.00E-68	ISS

Expression Patterns of Glyma01g04820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04820

Paralog	Evidence	Comments
Glyma02g02690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g041300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04820

Limit To All Plant Sequences

>Glyma01g04820.1   sequence type=CDS   gene model=Glyma01g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCACCGCAAGCAACAACGACGTCGCCGCCGCCGCCGACGGCCCCGTGATGAGCCTAATCAACAAGCGCCTCCGCGCCCTCCGCAAGAAGCTGAACCGCATCCTCGCCATGGAAGAGGCCGTCACCCAGGGCAAGCCTCTGAACAAGGAGCAGGAAGAGGTTCTCCGCTCCAAACCCTCCGTCCTTGCTCTCATCGACGAGCTCGAGAAGCTCCGCCAGCCTCTCGCCACCGCCCTCTCCGAAGAGCTCCAAAACAACGGCACCTCCTCTCAAAACTCTCGCGAGACCGAGACCGAGACCGAAAACGAAACCCTAGCTGAGAGCTCCGGTTCGGTTGAGCCGAACACGAACTCGACCACGAACGACGTCGTTGTGGAGGACCTGCTTAATTTGCTCTACTTTGGTTCGCTCTTTGACGTGAAGAGTGACTTTGCGTCCACGATGCTTACCAGGACGCACGAACGCGGCTGCTGCTTGACCTACGACTACGTCACCGACGACGCCACCGATCTGCTCGGCGAGAAGGACTTGGATTCGATCTCCGCCCTGCGCGGGCTGCTCGTTTCGCGGCCCGCGGATTCAAGCTTCTCCCACAAGAACGCGCTACAGCGCTGCCTGGAACACGCCAGGCTGTGGCTTACCAAGTCGGAGCAGCCCATTGAACCTGATACTGATGTTACTTATGCTGCATTGAGGGAGAAGTTGAACAAGATTATGTCTTCGGAGTACTTTATTACCACTCCTGAGATGAAGGCTCCGGTTGAAGTTGCTGCGGCTGCTGCTGGGGGTAATTACGTGTCTTTCCATGTGCCGGTGCATGGGTCTGTGGTTCCAGTTGAAGTTGAGCAACCCGTTTTTCAGTCTCAGGAGAAGGATGAAGGAACTGCAAATTTTCAAGGACATGGATCTGAAGAAGATCTGTCTGATCATGAGGGAGAGCTTCAGAAGGATGAAGTAGAAGCAGAAAATGCAGGTGAAGTGGTGTCAGCTCAACATGAACAGGCGAACCAACAAGCAGATGTAGAGTATAATGAGCGAGATGTAGAGGCAAAGGACCAGCAGTCATACCCCAGGAGGGGTTATCAGAACCATAGAGGTGGTCGTGGTGGAGGTGGTCGCAGGGGTTACTCAAATGGTCGTGGAGGTCGAAGTGGTGGCAGAGGAGGCTACCAAAACGGGCGCAATCAATACTACGATCAGCCTGGAAATTATTATCCAAGGAACAACTATTATAACAACAGAGGAAGGGGCGGCAGAGGTGGTGGCTATTACAACAACCATGGTGCAGGCGGTCAAGTTAATCATGTCGCAGGTGATGTGGGGGTGCAATCATGA

Predicted protein sequences of Glyma01g04820

Limit To All Plant Sequences

>Glyma01g04820.1   sequence type=predicted peptide   gene model=Glyma01g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATASNNDVAAAADGPVMSLINKRLRALRKKLNRILAMEEAVTQGKPLNKEQEEVLRSKPSVLALIDELEKLRQPLATALSEELQNNGTSSQNSRETETETENETLAESSGSVEPNTNSTTNDVVVEDLLNLLYFGSLFDVKSDFASTMLTRTHERGCCLTYDYVTDDATDLLGEKDLDSISALRGLLVSRPADSSFSHKNALQRCLEHARLWLTKSEQPIEPDTDVTYAALREKLNKIMSSEYFITTPEMKAPVEVAAAAAGGNYVSFHVPVHGSVVPVEVEQPVFQSQEKDEGTANFQGHGSEEDLSDHEGELQKDEVEAENAGEVVSAQHEQANQQADVEYNERDVEAKDQQSYPRRGYQNHRGGRGGGGRRGYSNGRGGRSGGRGGYQNGRNQYYDQPGNYYPRNNYYNNRGRGGRGGGYYNNHGAGGQVNHVAGDVGVQS*

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