SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02590 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:704977-706494 FORWARD LENGTH=324 | SoyBase | E_val: 1.00E-104 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF06695 | PFAM | Putative small multi-drug export protein | JGI | ISS | |
| UniRef100_C6T8D0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8D0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7K8C6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Small multi-drug export protein n=1 Tax=Medicago truncatula RepID=G7K8C6_MEDTR | SoyBase | E_val: 8.00E-117 | ISS |
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Glyma01g04740 not represented in the dataset |
Glyma01g04740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g040500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g04740.1 sequence type=CDS gene model=Glyma01g04740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCTCAGCTTTGTCACTAACATCCCCATTCCATTTCAGAAAACCCCACAACAGGGTTTCACCTCTCAATGCTCATCCTCTCATTCTCATCCAAAAGGGTAAACAATCTCTTAAATCAAACTTCTCATTCTCAACCCTGAATGCTTCCCCCCACTTCAGACCCCCTATTGCCATTGCTCCTTCCACACTGACCCTAACAAGAGCTTCTTCCTCTGATGAATGCTTTGACCCTGCTGGTGAAGCCCAAAGGTTGCTGCTTTCTGAGGAAAAACCAGTTAATTTTGCTTTCTGGGTCATATTTTGGGCCTCTTTGTCCCTGGCTTGGTTTGCTGTTTCAAGGGATGCTAATGCTGCTGTTGAATCCTCCATCAAAGCCTCTGGCTTTGGCTTCAACATTGCCAATTCGTTGAGGAAATTGGGTTGGCCTGATTGGGTTGTGGTGTTCACCCTTGCCACTCTTCCTGTGCTTGAGCTTCGTGGGGCTATACCTGTTGGTTACTGGATGCAACTTAACCCTGTAACTTTAACAGTGTTATCTATTCTGGGGAACATGGTCCCTGTGCCATTCATCGTGCTCTACCTTAAAAAAATTGCGTCTTTCGTTGCTGCGAGGAGCCCTTCTGCGTCTCGATTCCTTGACATGCTGTTCGAGAATGCCAAAGAGAAGGCTGGTCCAGTGGAGGAGTTTCAGTGGCTTGGTCTGATGCTCTTTGTGGCTGTTCCTTTTCCTGGAACAGGAGCATGGACCGGAGCCTTTATAGCATCCATTCTTGATATGCCATTTTGGGCTGCTGTGTCTGCTAATTTCTTTGGTGTTGTATTTGCTGGGTTGCTAGTAAATTTGTTAGTGAACCTTGGTCTGAAGTATGCCATCATTACTGGTGTCATCCTTTTCTTTGTTTCCACATTCATGTGGAGTGTCCTTAGAAATCTTAAAAAAGGTTTGAGCTCGTCAAATTGA
>Glyma01g04740.1 sequence type=predicted peptide gene model=Glyma01g04740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASALSLTSPFHFRKPHNRVSPLNAHPLILIQKGKQSLKSNFSFSTLNASPHFRPPIAIAPSTLTLTRASSSDECFDPAGEAQRLLLSEEKPVNFAFWVIFWASLSLAWFAVSRDANAAVESSIKASGFGFNIANSLRKLGWPDWVVVFTLATLPVLELRGAIPVGYWMQLNPVTLTVLSILGNMVPVPFIVLYLKKIASFVAARSPSASRFLDMLFENAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFIASILDMPFWAAVSANFFGVVFAGLLVNLLVNLGLKYAIITGVILFFVSTFMWSVLRNLKKGLSSSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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