Glyma01g04690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g04690

Feature Type:	gene_model
Chromosome:	Gm01
Start:	4314361
stop:	4316230
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g04690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10360	AT	Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 18 \| chr1:3395738-3396806 REVERSE LENGTH=227	SoyBase	E_val: 3.00E-83	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
KOG0406	KOG	Glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF16	Panther	GLUTATHIONE S-TRANSFERASE THETA	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_C6T188	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T188_SOYBN	SoyBase	E_val: 2.00E-170	ISS
UniRef100_Q9FQF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase GST 5 n=1 Tax=Glycine max RepID=Q9FQF3_SOYBN	SoyBase	E_val: 3.00E-122	ISS

Expression Patterns of Glyma01g04690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g04690

Paralog	Evidence	Comments
Glyma02g02880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g04690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g040000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g04690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g04690

Limit To All Plant Sequences

>Glyma01g04690.1   sequence type=CDS   gene model=Glyma01g04690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAAAACGAGTTGAGGCTTTTGGGTGCTTGGTTCAGTCCATATGCCCTGAGGGTGCAGATTGCCCTTAACCTCAAGGGTCTAGATTATGAGGTTGTTGAAGAGACCTTGAATCCCAAAAGTGATCTGCTTCTTAAGTCCAACCCTGTGCACAAGAAAATCCCAGTTCTACTCCATGGAGATAAAGTCATATGTGAATCTGCAATCATAGTAGAGTACATAGATGAGGTTTGGTCCAACAATGCTCTCTCCATCCTTCCACAAAATGCTTATGACCGAGCTAATGCCCGATTTTGGGTTTCTTACATCGATGACAAGTGGTATACGTCCATAAGGAATACTATTTTGGCTGAAGCGGCTGATCAAGATGATGAGGCAAAGAAGCCACACTTTGTGAGAATGGAAGAAGCTCTTGAGAGGATGGAAGAAGTGTTCAACAAGTGCAGTGAAGGAAGGGCTTATTTTGGAGGAGATACAATTGGAATTATTGACATTGCTTTTGGGAGCCTTTGGGGTTGGGTGAGAGTGATAGAGGAGATGAATGGAAGAAAAGTGTTTGATGAAGCAAAAAACCCTGCTTTGGCTAAATGGGCTGATAAGTTTTCTGCTGATCCTGCTGTGAAGGGTGTTCTTCCAGAGACTCAAAAGCTTATTGAGTTTGCCAAAATTCGTAAGCAAAAATGGGCTGCTGCAGCTGCAAAGTAA

Predicted protein sequences of Glyma01g04690

Limit To All Plant Sequences

>Glyma01g04690.1   sequence type=predicted peptide   gene model=Glyma01g04690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKNELRLLGAWFSPYALRVQIALNLKGLDYEVVEETLNPKSDLLLKSNPVHKKIPVLLHGDKVICESAIIVEYIDEVWSNNALSILPQNAYDRANARFWVSYIDDKWYTSIRNTILAEAADQDDEAKKPHFVRMEEALERMEEVFNKCSEGRAYFGGDTIGIIDIAFGSLWGWVRVIEEMNGRKVFDEAKNPALAKWADKFSADPAVKGVLPETQKLIEFAKIRKQKWAAAAAK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain