Report for Sequence Feature Glyma01g04670
Feature Type: gene_model
Chromosome: Gm01
Start: 4302122
stop: 4303918
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g04670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G10380 AT
Annotation by Michelle Graham. TAIR10: Putative membrane lipoprotein | chr1:3400706-3402110 FORWARD LENGTH=305
SoyBase E_val: 4.00E-102 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_G7K8A0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Wall-associated receptor kinase-like protein n=1 Tax=Medicago truncatula RepID=G7K8A0_MEDTR
SoyBase E_val: 5.00E-177 ISS
UniRef100_I1J5I2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5I2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g04670
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g04670
Paralog Evidence Comments
Glyma02g02890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g04670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g039900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g04670
Coding sequences of Glyma01g04670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g04670.1 sequence type=CDS gene model=Glyma01g04670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTTCACTTACCCTTCACTTCTCTCCATTTTCCTTCTCCTACTACTTCCTTCTCTGATCTCATCACAAATCTGCCAGAAAAACTGTGGCAAAGAAACTGTCAAGTACCCTTTTGGCAGTGGTCCTGGTTGTGGAGACCCTCGTTTCCAACCACATGTGACATGTAGCAACCAAAAGCTCACATTCACCACTCACACAGGCTCCTACCCTGTTACCTCAATTGACTACACCAACCAAGTCATATACATCTCAGATCCCACCATGTCAACATGCTCTTGCACTGTCCCTAGCAAAGGCTTTGGCCTTAACTGGGATGCACCATTTACCTTTGCTGATAGCACCATCTTTGCTCTAGTAGATTGCTCAATGAACTCATCATCCATATGCCAATCAAATGGCTATGATGATGGGAGCAATTCTAAGCTTTTATGTGATCAAGGGACACCAATTTGTAGTCTTCTATATTCATGCAGACCTATTAGCACCATCAACCTTCCAATCTCAACGTGCTGCGTTTACACGCCGGTTAATCTCGGTCCGGCTTTTGAGATGGATCTGCAGAAGCTGCAATGCCCTTCTTACACGGGGTTCTACAACTTCAATGATCAACAAACGGATCCTGAAAAGTGGAACTATGGAATAGCACTCAAATACAAGTTCAGTGTCACAAATGACTATCCTGGCTCGTGTGATGCGTGTGAAAGGAGCCATGGTGTGTGTGGGTATGGTGGAGCCTATAACTCGTTTGTCTGCAATTGTCCTAATGGGATTAACACTACAACAGATTGTTTCTTCATATCATCTTATAACAAGGGTTTTAGAAATGGGGTTGCTTGGTTGATCTATCCTGTAGCATGGTTTCTTGTTTGGTTTTTCTTGTAA
Predicted protein sequences of Glyma01g04670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g04670.1 sequence type=predicted peptide gene model=Glyma01g04670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDFTYPSLLSIFLLLLLPSLISSQICQKNCGKETVKYPFGSGPGCGDPRFQPHVTCSNQKLTFTTHTGSYPVTSIDYTNQVIYISDPTMSTCSCTVPSKGFGLNWDAPFTFADSTIFALVDCSMNSSSICQSNGYDDGSNSKLLCDQGTPICSLLYSCRPISTINLPISTCCVYTPVNLGPAFEMDLQKLQCPSYTGFYNFNDQQTDPEKWNYGIALKYKFSVTNDYPGSCDACERSHGVCGYGGAYNSFVCNCPNGINTTTDCFFISSYNKGFRNGVAWLIYPVAWFLVWFFL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
